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yum duplicates problem

Discussion in 'System Administration' started by hitman, Oct 23, 2017.

  1. hitman

    hitman Member

    117
    10
    18
    Jul 18, 2014
    Ratings:
    +14
    Local Time:
    8:13 AM
    hello
    while trying to update yum with
    Code:
    yum update --disableplugin=priorities --enablerepo=remi
    i get lots of duplicates, any ideas?
    Code:
    Error: systemd conflicts with dracut-033-463.el7_3.2.x86_64
     You could try using --skip-broken to work around the problem
    ** Found 192 pre-existing rpmdb problem(s), 'yum check' output follows:
    1:NetworkManager-1.8.0-9.el7.x86_64 is a duplicate with 1:NetworkManager-1.4.0-20.el7_3.x86_64
    1:NetworkManager-libnm-1.8.0-9.el7.x86_64 is a duplicate with 1:NetworkManager-libnm-1.4.0-20.el7_3.x86_64
    atk-2.22.0-3.el7.x86_64 is a duplicate with atk-2.14.0-1.el7.x86_64
    audit-libs-2.7.6-3.el7.x86_64 is a duplicate with audit-libs-2.6.5-3.el7_3.1.x86_64
    bash-4.2.46-29.el7_4.x86_64 is a duplicate with bash-4.2.46-21.el7_3.x86_64
    32:bind-libs-9.9.4-51.el7.x86_64 is a duplicate with 32:bind-libs-9.9.4-50.el7_3.1.x86_64
    32:bind-libs-lite-9.9.4-51.el7.x86_64 is a duplicate with 32:bind-libs-lite-9.9.4-50.el7_3.1.x86_64
    32:bind-license-9.9.4-51.el7.noarch is a duplicate with 32:bind-license-9.9.4-50.el7_3.1.noarch
    binutils-2.25.1-32.base.el7_4.1.x86_64 is a duplicate with binutils-2.25.1-22.base.el7.x86_64
    bluez-libs-5.44-4.el7_4.x86_64 is a duplicate with bluez-libs-5.41-1.el7.x86_64
    boost-system-1.53.0-27.el7.x86_64 is a duplicate with boost-system-1.53.0-26.el7.x86_64
    boost-thread-1.53.0-27.el7.x86_64 is a duplicate with boost-thread-1.53.0-26.el7.x86_64
    ca-certificates-2017.2.14-71.el7.noarch is a duplicate with ca-certificates-2017.2.14-70.1.el7_3.noarch
    cairo-1.14.8-2.el7.x86_64 is a duplicate with cairo-1.14.2-1.el7.x86_64
    centos-release-7-4.1708.el7.centos.x86_64 is a duplicate with centos-release-7-3.1611.el7.centos.x86_64
    chkconfig-1.7.4-1.el7.x86_64 is a duplicate with chkconfig-1.7.2-1.el7_3.1.x86_64
    cpio-2.11-25.el7_4.x86_64 is a duplicate with cpio-2.11-24.el7.x86_64
    cpp-4.8.5-16.el7.x86_64 is a duplicate with cpp-4.8.5-11.el7.x86_64
    cronie-1.4.11-17.el7.x86_64 is a duplicate with cronie-1.4.11-14.el7_2.1.x86_64
    cronie-anacron-1.4.11-17.el7.x86_64 is a duplicate with cronie-anacron-1.4.11-14.el7_2.1.x86_64
    cryptsetup-libs-1.7.4-3.el7.x86_64 is a duplicate with cryptsetup-libs-1.7.2-1.el7.x86_64
    1:cups-libs-1.6.3-29.el7.x86_64 is a duplicate with 1:cups-libs-1.6.3-26.el7.x86_64
    curl-7.29.0-42.el7.x86_64 is a duplicate with curl-7.29.0-35.el7.centos.x86_64
    cyrus-imapd-utils-2.4.17-13.el7.x86_64 is a duplicate with cyrus-imapd-utils-2.4.17-8.el7_3.1.x86_64
    cyrus-sasl-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-2.1.26-20.el7_2.x86_64
    cyrus-sasl-devel-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-devel-2.1.26-20.el7_2.x86_64
    cyrus-sasl-lib-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-lib-2.1.26-20.el7_2.x86_64
    7:device-mapper-1.02.140-8.el7.x86_64 is a duplicate with 7:device-mapper-1.02.135-1.el7_3.5.x86_64
    7:device-mapper-libs-1.02.140-8.el7.x86_64 is a duplicate with 7:device-mapper-libs-1.02.135-1.el7_3.5.x86_64
    12:dhclient-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhclient-4.2.5-47.el7.centos.x86_64
    12:dhcp-common-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhcp-common-4.2.5-47.el7.centos.x86_64
    12:dhcp-libs-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhcp-libs-4.2.5-47.el7.centos.x86_64
    1:dmidecode-3.0-5.el7.x86_64 is a duplicate with 1:dmidecode-3.0-2.1.el7_3.x86_64
    dracut-033-502.el7.x86_64 is a duplicate with dracut-033-463.el7_3.2.x86_64
    dracut-network-033-502.el7.x86_64 is a duplicate with dracut-network-033-463.el7_3.2.x86_64
    e2fsprogs-1.42.9-10.el7.x86_64 is a duplicate with e2fsprogs-1.42.9-9.el7.x86_64
    e2fsprogs-libs-1.42.9-10.el7.x86_64 is a duplicate with e2fsprogs-libs-1.42.9-9.el7.x86_64
    elfutils-libelf-0.168-8.el7.x86_64 is a duplicate with elfutils-libelf-0.166-2.el7.x86_64
    elfutils-libelf-devel-0.168-8.el7.x86_64 is a duplicate with elfutils-libelf-devel-0.166-2.el7.x86_64
    elfutils-libs-0.168-8.el7.x86_64 is a duplicate with elfutils-libs-0.166-2.el7.x86_64
    2:ethtool-4.8-1.el7.x86_64 is a duplicate with 2:ethtool-4.5-3.el7.x86_64
    fipscheck-1.4.1-6.el7.x86_64 is a duplicate with fipscheck-1.4.1-5.el7.x86_64
    fipscheck-lib-1.4.1-6.el7.x86_64 is a duplicate with fipscheck-lib-1.4.1-5.el7.x86_64
    fontconfig-2.10.95-11.el7.x86_64 is a duplicate with fontconfig-2.10.95-10.el7.x86_64
    freetype-2.4.11-15.el7.x86_64 is a duplicate with freetype-2.4.11-12.el7.x86_64
    freetype-devel-2.4.11-15.el7.x86_64 is a duplicate with freetype-devel-2.4.11-12.el7.x86_64
    gcc-4.8.5-16.el7.x86_64 is a duplicate with gcc-4.8.5-11.el7.x86_64
    gdk-pixbuf2-2.36.5-1.el7.x86_64 is a duplicate with gdk-pixbuf2-2.31.6-3.el7.x86_64
    gettext-0.19.8.1-2.el7.x86_64 is a duplicate with gettext-0.18.2.1-4.el7.x86_64
    gettext-common-devel-0.19.8.1-2.el7.noarch is a duplicate with gettext-common-devel-0.18.2.1-4.el7.noarch
    gettext-libs-0.19.8.1-2.el7.x86_64 is a duplicate with gettext-libs-0.18.2.1-4.el7.x86_64
    ghostscript-9.07-28.el7_4.2.x86_64 is a duplicate with ghostscript-9.07-20.el7_3.7.x86_64
    git-1.8.3.1-12.el7_4.x86_64 is a duplicate with git-1.8.3.1-6.el7_2.1.x86_64
    glib2-2.50.3-3.el7.x86_64 is a duplicate with glib2-2.46.2-4.el7.x86_64
    glibc-2.17-196.el7.x86_64 is a duplicate with glibc-2.17-157.el7_3.5.x86_64
    glibc-common-2.17-196.el7.x86_64 is a duplicate with glibc-common-2.17-157.el7_3.5.x86_64
    glibc-devel-2.17-196.el7.x86_64 is a duplicate with glibc-devel-2.17-157.el7_3.5.x86_64
    glibc-headers-2.17-196.el7.x86_64 is a duplicate with glibc-headers-2.17-157.el7_3.5.x86_64
    1:gmp-6.0.0-15.el7.x86_64 is a duplicate with 1:gmp-6.0.0-12.el7_1.x86_64
    gobject-introspection-1.50.0-1.el7.x86_64 is a duplicate with gobject-introspection-1.42.0-1.el7.x86_64
    grep-2.20-3.el7.x86_64 is a duplicate with grep-2.20-2.el7.x86_64
    grubby-8.28-23.el7.x86_64 is a duplicate with grubby-8.28-21.el7_3.x86_64
    gsettings-desktop-schemas-3.22.0-1.el7.x86_64 is a duplicate with gsettings-desktop-schemas-3.14.2-1.el7.x86_64
    gzip-1.5-9.el7.x86_64 is a duplicate with gzip-1.5-8.el7.x86_64
    harfbuzz-1.3.2-1.el7.x86_64 is a duplicate with harfbuzz-0.9.36-1.el7.x86_64
    hwdata-0.252-8.6.el7.x86_64 is a duplicate with hwdata-0.252-8.4.el7.x86_64
    initscripts-9.49.39-1.el7.x86_64 is a duplicate with initscripts-9.49.37-1.el7_3.1.x86_64
    iproute-3.10.0-87.el7.x86_64 is a duplicate with iproute-3.10.0-74.el7.x86_64
    ipset-libs-6.29-1.el7.x86_64 is a duplicate with ipset-libs-6.19-6.el7.x86_64
    iptables-1.4.21-18.0.1.el7.centos.x86_64 is a duplicate with iptables-1.4.21-17.el7.x86_64
    iputils-20160308-10.el7.x86_64 is a duplicate with iputils-20160308-8.el7.x86_64
    jansson-2.10-1.el7.x86_64 is a duplicate with jansson-2.4-6.el7.x86_64
    jasper-libs-1.900.1-31.el7.x86_64 is a duplicate with jasper-libs-1.900.1-30.el7_3.x86_64
    kbd-legacy-1.15.5-13.el7.noarch is a duplicate with kbd-legacy-1.15.5-12.el7.noarch
    kernel-headers-3.10.0-693.2.2.el7.x86_64 is a duplicate with kernel-headers-3.10.0-514.26.2.el7.x86_64
    kernel-tools-libs-3.10.0-693.2.2.el7.x86_64 is a duplicate with kernel-tools-libs-3.10.0-514.26.2.el7.x86_64
    kmod-20-15.el7_4.2.x86_64 is a duplicate with kmod-20-9.el7.x86_64
    kmod-libs-20-15.el7_4.2.x86_64 is a duplicate with kmod-libs-20-9.el7.x86_64
    kpartx-0.4.9-111.el7.x86_64 is a duplicate with kpartx-0.4.9-99.el7_3.3.x86_64
    krb5-devel-1.15.1-8.el7.x86_64 is a duplicate with krb5-devel-1.14.1-27.el7_3.x86_64
    krb5-libs-1.15.1-8.el7.x86_64 is a duplicate with krb5-libs-1.14.1-27.el7_3.x86_64
    libICE-1.0.9-9.el7.x86_64 is a duplicate with libICE-1.0.9-2.el7.x86_64
    libICE-devel-1.0.9-9.el7.x86_64 is a duplicate with libICE-devel-1.0.9-2.el7.x86_64
    libX11-1.6.5-1.el7.x86_64 is a duplicate with libX11-1.6.3-3.el7.x86_64
    libX11-common-1.6.5-1.el7.noarch is a duplicate with libX11-common-1.6.3-3.el7.noarch
    libX11-devel-1.6.5-1.el7.x86_64 is a duplicate with libX11-devel-1.6.3-3.el7.x86_64
    libXcursor-1.1.14-8.el7.x86_64 is a duplicate with libXcursor-1.1.14-2.1.el7.x86_64
    libXfixes-5.0.3-1.el7.x86_64 is a duplicate with libXfixes-5.0.1-2.1.el7.x86_64
    libXfixes-devel-5.0.3-1.el7.x86_64 is a duplicate with libXfixes-devel-5.0.1-2.1.el7.x86_64
    libXi-1.7.9-1.el7.x86_64 is a duplicate with libXi-1.7.4-2.el7.x86_64
    libXpm-3.5.12-1.el7.x86_64 is a duplicate with libXpm-3.5.11-3.el7.x86_64
    libXrandr-1.5.1-2.el7.x86_64 is a duplicate with libXrandr-1.4.2-2.el7.x86_64
    libXrender-0.9.10-1.el7.x86_64 is a duplicate with libXrender-0.9.8-2.1.el7.x86_64
    libXt-1.1.5-3.el7.x86_64 is a duplicate with libXt-1.1.4-6.1.el7.x86_64
    libXxf86vm-1.1.4-1.el7.x86_64 is a duplicate with libXxf86vm-1.1.3-2.1.el7.x86_64
    libXxf86vm-devel-1.1.4-1.el7.x86_64 is a duplicate with libXxf86vm-devel-1.1.3-2.1.el7.x86_64
    libblkid-2.23.2-43.el7.x86_64 is a duplicate with libblkid-2.23.2-33.el7_3.2.x86_64
    libcap-2.22-9.el7.x86_64 is a duplicate with libcap-2.22-8.el7.x86_64
    libcom_err-1.42.9-10.el7.x86_64 is a duplicate with libcom_err-1.42.9-9.el7.x86_64
    libcom_err-devel-1.42.9-10.el7.x86_64 is a duplicate with libcom_err-devel-1.42.9-9.el7.x86_64
    libcroco-0.6.11-1.el7.x86_64 is a duplicate with libcroco-0.6.8-5.el7.x86_64
    libcurl-7.29.0-42.el7.x86_64 is a duplicate with libcurl-7.29.0-35.el7.centos.x86_64
    libdb-5.3.21-20.el7.x86_64 is a duplicate with libdb-5.3.21-19.el7.x86_64
    libdb-devel-5.3.21-20.el7.x86_64 is a duplicate with libdb-devel-5.3.21-19.el7.x86_64
    libdb-utils-5.3.21-20.el7.x86_64 is a duplicate with libdb-utils-5.3.21-19.el7.x86_64
    libdrm-2.4.74-1.el7.x86_64 is a duplicate with libdrm-2.4.67-3.el7.x86_64
    libdrm-devel-2.4.74-1.el7.x86_64 is a duplicate with libdrm-devel-2.4.67-3.el7.x86_64
    libfontenc-1.1.3-3.el7.x86_64 is a duplicate with libfontenc-1.1.2-3.el7.x86_64
    libgcc-4.8.5-16.el7.x86_64 is a duplicate with libgcc-4.8.5-11.el7.x86_64
    libgcrypt-1.5.3-14.el7.x86_64 is a duplicate with libgcrypt-1.5.3-13.el7_3.1.x86_64
    libgnome-keyring-3.12.0-1.el7.x86_64 is a duplicate with libgnome-keyring-3.8.0-3.el7.x86_64
    libgomp-4.8.5-16.el7.x86_64 is a duplicate with libgomp-4.8.5-11.el7.x86_64
    libibverbs-13-7.el7.x86_64 is a duplicate with libibverbs-1.2.1-1.el7.x86_64
    libkadm5-1.15.1-8.el7.x86_64 is a duplicate with libkadm5-1.14.1-27.el7_3.x86_64
    libmount-2.23.2-43.el7.x86_64 is a duplicate with libmount-2.23.2-33.el7_3.2.x86_64
    libnl3-3.2.28-4.el7.x86_64 is a duplicate with libnl3-3.2.28-3.el7_3.x86_64
    1:librados2-0.94.5-2.el7.x86_64 is a duplicate with 1:librados2-0.94.5-1.el7.x86_64
    libselinux-2.5-11.el7.x86_64 is a duplicate with libselinux-2.5-6.el7.x86_64
    libselinux-devel-2.5-11.el7.x86_64 is a duplicate with libselinux-devel-2.5-6.el7.x86_64
    libselinux-utils-2.5-11.el7.x86_64 is a duplicate with libselinux-utils-2.5-6.el7.x86_64
    libsemanage-2.5-8.el7.x86_64 is a duplicate with libsemanage-2.5-5.1.el7_3.x86_64
    libss-1.42.9-10.el7.x86_64 is a duplicate with libss-1.42.9-9.el7.x86_64
    libstdc++-4.8.5-16.el7.x86_64 is a duplicate with libstdc++-4.8.5-11.el7.x86_64
    libstdc++-devel-4.8.5-16.el7.x86_64 is a duplicate with libstdc++-devel-4.8.5-11.el7.x86_64
    libtasn1-4.10-1.el7.x86_64 is a duplicate with libtasn1-3.8-3.el7.x86_64
    libuuid-2.23.2-43.el7.x86_64 is a duplicate with libuuid-2.23.2-33.el7_3.2.x86_64
    libwebp-0.3.0-7.el7.x86_64 is a duplicate with libwebp-0.3.0-3.el7.x86_64
    libxcb-1.12-1.el7.x86_64 is a duplicate with libxcb-1.11-4.el7.x86_64
    libxcb-devel-1.12-1.el7.x86_64 is a duplicate with libxcb-devel-1.11-4.el7.x86_64
    linux-firmware-20170606-56.gitc990aae.el7.noarch is a duplicate with linux-firmware-20160830-49.git7534e19.el7.noarch
    logrotate-3.8.6-14.el7.x86_64 is a duplicate with logrotate-3.8.6-12.el7.x86_64
    lsscsi-0.27-6.el7.x86_64 is a duplicate with lsscsi-0.27-4.el7.x86_64
    mesa-libEGL-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libEGL-11.2.2-2.20160614.el7.x86_64
    mesa-libGL-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libGL-11.2.2-2.20160614.el7.x86_64
    mesa-libgbm-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libgbm-11.2.2-2.20160614.el7.x86_64
    mesa-libglapi-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libglapi-11.2.2-2.20160614.el7.x86_64
    ncurses-base-5.9-14.20130511.el7_4.noarch is a duplicate with ncurses-base-5.9-13.20130511.el7.noarch
    ncurses-devel-5.9-14.20130511.el7_4.x86_64 is a duplicate with ncurses-devel-5.9-13.20130511.el7.x86_64
    ncurses-libs-5.9-14.20130511.el7_4.x86_64 is a duplicate with ncurses-libs-5.9-13.20130511.el7.x86_64
    1:net-snmp-agent-libs-5.7.2-28.el7.x86_64 is a duplicate with 1:net-snmp-agent-libs-5.7.2-24.el7_3.2.x86_64
    1:net-snmp-libs-5.7.2-28.el7.x86_64 is a duplicate with 1:net-snmp-libs-5.7.2-24.el7_3.2.x86_64
    nss-softokn-3.28.3-8.el7_4.x86_64 is a duplicate with nss-softokn-3.16.2.3-14.4.el7.x86_64
    nss-softokn-freebl-3.28.3-8.el7_4.x86_64 is a duplicate with nss-softokn-freebl-3.16.2.3-14.4.el7.x86_64
    nss-util-3.28.4-3.el7.x86_64 is a duplicate with nss-util-3.28.4-1.0.el7_3.x86_64
    openldap-2.4.44-5.el7.x86_64 is a duplicate with openldap-2.4.40-13.el7.x86_64
    openssh-7.4p1-12.el7_4.x86_64 is a duplicate with openssh-6.6.1p1-35.el7_3.x86_64
    openssh-clients-7.4p1-12.el7_4.x86_64 is a duplicate with openssh-clients-6.6.1p1-35.el7_3.x86_64
    1:openssl-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-1.0.1e-60.el7_3.1.x86_64
    1:openssl-devel-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-devel-1.0.1e-60.el7_3.1.x86_64
    1:openssl-libs-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64
    p11-kit-0.23.5-3.el7.x86_64 is a duplicate with p11-kit-0.20.7-3.el7.x86_64
    p11-kit-trust-0.23.5-3.el7.x86_64 is a duplicate with p11-kit-trust-0.20.7-3.el7.x86_64
    pango-1.40.4-1.el7.x86_64 is a duplicate with pango-1.36.8-2.el7.x86_64
    pciutils-3.5.1-2.el7.x86_64 is a duplicate with pciutils-3.5.1-1.el7.x86_64
    pciutils-libs-3.5.1-2.el7.x86_64 is a duplicate with pciutils-libs-3.5.1-1.el7.x86_64
    pcre-8.32-17.el7.x86_64 is a duplicate with pcre-8.32-15.el7_2.1.x86_64
    pcre-devel-8.32-17.el7.x86_64 is a duplicate with pcre-devel-8.32-15.el7_2.1.x86_64
    4:perl-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-5.16.3-291.el7.x86_64
    perl-ExtUtils-Install-1.58-292.el7.noarch is a duplicate with perl-ExtUtils-Install-1.58-291.el7.noarch
    1:perl-ExtUtils-ParseXS-3.18-3.el7.noarch is a duplicate with 1:perl-ExtUtils-ParseXS-3.18-2.el7.noarch
    perl-Git-1.8.3.1-12.el7_4.noarch is a duplicate with perl-Git-1.8.3.1-6.el7_2.1.noarch
    perl-Net-SSLeay-1.55-6.el7.x86_64 is a duplicate with perl-Net-SSLeay-1.55-4.el7.x86_64
    4:perl-devel-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-devel-5.16.3-291.el7.x86_64
    4:perl-libs-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-libs-5.16.3-291.el7.x86_64
    4:perl-macros-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-macros-5.16.3-291.el7.x86_64
    policycoreutils-2.5-17.1.el7.x86_64 is a duplicate with policycoreutils-2.5-11.el7_3.x86_64
    procps-ng-3.3.10-16.el7.x86_64 is a duplicate with procps-ng-3.3.10-10.el7.x86_64
    python-2.7.5-58.el7.x86_64 is a duplicate with python-2.7.5-48.el7.x86_64
    python-libs-2.7.5-58.el7.x86_64 is a duplicate with python-libs-2.7.5-48.el7.x86_64
    python-perf-3.10.0-693.2.2.el7.x86_64 is a duplicate with python-perf-3.10.0-514.26.2.el7.x86_64
    readline-6.2-10.el7.x86_64 is a duplicate with readline-6.2-9.el7.x86_64
    rpm-4.11.3-25.el7.x86_64 is a duplicate with rpm-4.11.3-21.el7.x86_64
    rpm-build-libs-4.11.3-25.el7.x86_64 is a duplicate with rpm-build-libs-4.11.3-21.el7.x86_64
    rpm-devel-4.11.3-25.el7.x86_64 is a duplicate with rpm-devel-4.11.3-21.el7.x86_64
    rpm-libs-4.11.3-25.el7.x86_64 is a duplicate with rpm-libs-4.11.3-21.el7.x86_64
    rpm-python-4.11.3-25.el7.x86_64 is a duplicate with rpm-python-4.11.3-21.el7.x86_64
    rsync-3.0.9-18.el7.x86_64 is a duplicate with rsync-3.0.9-17.el7.x86_64
    shared-mime-info-1.8-3.el7.x86_64 is a duplicate with shared-mime-info-1.1-9.el7.x86_64
    subversion-libs-1.7.14-11.el7_4.x86_64 is a duplicate with subversion-libs-1.7.14-10.el7.x86_64
    systemd-219-42.el7_4.1.x86_64 has installed conflicts dracut < ('0', '033', '499'): dracut-033-463.el7_3.2.x86_64
    systemd-219-42.el7_4.1.x86_64 is a duplicate with systemd-219-30.el7_3.9.x86_64
    systemd-libs-219-42.el7_4.1.x86_64 is a duplicate with systemd-libs-219-30.el7_3.9.x86_64
    systemd-sysv-219-42.el7_4.1.x86_64 is a duplicate with systemd-sysv-219-30.el7_3.9.x86_64
    systemtap-sdt-devel-3.1-3.el7.x86_64 is a duplicate with systemtap-sdt-devel-3.0-7.el7.x86_64
    2:tar-1.26-32.el7.x86_64 is a duplicate with 2:tar-1.26-31.el7.x86_64
    util-linux-2.23.2-43.el7.x86_64 is a duplicate with util-linux-2.23.2-33.el7_3.2.x86_64
    2:vim-minimal-7.4.160-2.el7.x86_64 is a duplicate with 2:vim-minimal-7.4.160-1.el7_3.1.x86_64
    virt-what-1.13-10.el7.x86_64 is a duplicate with virt-what-1.13-8.el7.x86_64
    1:wpa_supplicant-2.6-5.el7.x86_64 is a duplicate with 1:wpa_supplicant-2.0-21.el7_3.x86_64
    xorg-x11-proto-devel-7.7-20.el7.noarch is a duplicate with xorg-x11-proto-devel-7.7-13.el7.noarch
    yum-3.4.3-154.el7.centos.noarch is a duplicate with yum-3.4.3-150.el7.centos.noarch
    yum-plugin-fastestmirror-1.1.31-42.el7.noarch is a duplicate with yum-plugin-fastestmirror-1.1.31-40.el7.noarch
    

     
  2. eva2000

    eva2000 Administrator Staff Member

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    Nginx 1.13.x
    MariaDB 5.5
    for command
    Code (Text):
    yum update --disableplugin=priorities --enablerepo=remi
    

    copy and paste full output to pastebin.com or gist.github.com and provide link to it here
     
  3. hitman

    hitman Member

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    +14
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  4. eva2000

    eva2000 Administrator Staff Member

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    Nginx 1.13.x
    MariaDB 5.5
    1. how much memory do you have on server ?
    Code (Text):
    free -m
    

    2. looks like you haven't updated in ages ???

    what out put do you get just for
    Code (Text):
    yum clean all
    yum -y update
    
     
  5. hitman

    hitman Member

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    8:13 AM


    this is the output of free -m
    Code:
                  total        used        free      shared  buff/cache   available
    Mem:           1839         385         415         292        1038         877
    Swap:          1023         125         898
    
    while trying
    Code (Text):
    yum clean all
    yum -y update
    


    i get the same
    # yum -y update Loaded plugins: fastestmirror, priorities, versionlock base - Pastebin.com



    its true i havent update this server for quite some time now
     
  6. eva2000

    eva2000 Administrator Staff Member

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    output for
    Code (Text):
    package-cleanup --dupes
    
     
  7. eva2000

    eva2000 Administrator Staff Member

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    Nginx 1.13.x
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    once got --dupes output try cleaning up duplicates with command below - copy and paste output of this command too for reference
    Code (Text):
    package-cleanup --cleandupes
    

    then double check with
    Code (Text):
    package-cleanup --problems
    

    then try yum update
    Code (Text):
    yum -y update
    
     
  8. hitman

    hitman Member

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    Code (Text):
    package-cleanup --dupes
    

    Error Log report - Pastebin.com


    Code (Text):
    package-cleanup --cleandupes
    

    not all fits in the terminal scroll
    --> Processing Dependency: NetworkManager-libnm(x86-64) = 1:1.4.0-20.el7_3 for p - Pastebin.com


    Code (Text):
    package-cleanup --problems
    

    output
    Code:
    # package-cleanup --problems
    Loaded plugins: fastestmirror, priorities, versionlock
    Package systemd-219-42.el7_4.1.x86_64 has installed conflicts dracut < ('0', '033', '499'): dracut-033-463.el7_3.2.x86_64
    



    Code (Text):
    yum -y update
    

    # yum -y update Loaded plugins: fastestmirror, priorities, versionlock varnish - Pastebin.com
     
  9. eva2000

    eva2000 Administrator Staff Member

    30,579
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    1st --dupes error log seems funky.. you sure you copied and pasted correct output ?

    package-cleanup --cleandupes hit a limit from output
    Code (Text):
    Error: Depsolving loop limit reached.
    

    seems problem could be systemd package conflict
    Code (Text):
    Error: systemd conflicts with dracut-033-463.el7_3.2.x86_64
    

    Code (Text):
    systemd-219-42.el7_4.1.x86_64 has installed conflicts dracut < ('0', '033', '499'): dracut-033-463.el7_3.2.x86_64
    


    so try raising depsolving loop limit first edit /etc/yum.conf under [main] section add
    Code (Text):
    depsolve_loop_limit=forever
    

    from CentOS 7.0 - man page for yum.conf (centos section 5) - Unix & Linux Commands
    then retry
    Code (Text):
    package-cleanup --cleandupes
    

    then
    Code (Text):
    yum -y update
    
     
  10. hitman

    hitman Member

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    8:13 AM
    not solved, if i change the
    Code:
    depsolve_loop_limit=forever
    first of all it does not let me change it to forever (i am on centos 7)
    but i set it on 5000 and still nothing, the server kicked me out.
     
  11. eva2000

    eva2000 Administrator Staff Member

    30,579
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    Nginx 1.13.x
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    what if you try cleandupes excluding NetworkManager packages first ?
    Code (Text):
    package-cleanup --cleandupes --exclude=NetworkManager --exclude=NetworkManager-libnm
    

    which web host ?

    also output for these 2
    Code (Text):
    yum info NetworkManager
    

    Code (Text):
    yum info NetworkManager-libnm
    
     
    Last edited: Oct 24, 2017
  12. eva2000

    eva2000 Administrator Staff Member

    30,579
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    Local Time:
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    Nginx 1.13.x
    MariaDB 5.5
    seems this thread is the exact same problem you got Something went very wrong - CentOS

    so you can do the following within a tmux or screen session so network disconnection doesn't abort the processes


    Within SSH via screen or tmux session

    1. backup yum / rpm databases etc just in case
    Code (Text):
    cp -a /var/lib/rpm /var/lib/rpm-backup
    cp -a /var/lib/yum /var/lib/yum-backup
    

    2. remove the newest package duplicates by first grabbing your duplicates listing and saving to yum-update-dupes.txt file which contains
    Code (Text):
    1:NetworkManager-1.8.0-9.el7.x86_64 is a duplicate with 1:NetworkManager-1.4.0-20.el7_3.x86_64
    1:NetworkManager-libnm-1.8.0-9.el7.x86_64 is a duplicate with 1:NetworkManager-libnm-1.4.0-20.el7_3.x86_64
    atk-2.22.0-3.el7.x86_64 is a duplicate with atk-2.14.0-1.el7.x86_64
    audit-libs-2.7.6-3.el7.x86_64 is a duplicate with audit-libs-2.6.5-3.el7_3.1.x86_64
    bash-4.2.46-29.el7_4.x86_64 is a duplicate with bash-4.2.46-21.el7_3.x86_64
    32:bind-libs-9.9.4-51.el7.x86_64 is a duplicate with 32:bind-libs-9.9.4-50.el7_3.1.x86_64
    32:bind-libs-lite-9.9.4-51.el7.x86_64 is a duplicate with 32:bind-libs-lite-9.9.4-50.el7_3.1.x86_64
    32:bind-license-9.9.4-51.el7.noarch is a duplicate with 32:bind-license-9.9.4-50.el7_3.1.noarch
    binutils-2.25.1-32.base.el7_4.1.x86_64 is a duplicate with binutils-2.25.1-22.base.el7.x86_64
    bluez-libs-5.44-4.el7_4.x86_64 is a duplicate with bluez-libs-5.41-1.el7.x86_64
    boost-system-1.53.0-27.el7.x86_64 is a duplicate with boost-system-1.53.0-26.el7.x86_64
    boost-thread-1.53.0-27.el7.x86_64 is a duplicate with boost-thread-1.53.0-26.el7.x86_64
    ca-certificates-2017.2.14-71.el7.noarch is a duplicate with ca-certificates-2017.2.14-70.1.el7_3.noarch
    cairo-1.14.8-2.el7.x86_64 is a duplicate with cairo-1.14.2-1.el7.x86_64
    centos-release-7-4.1708.el7.centos.x86_64 is a duplicate with centos-release-7-3.1611.el7.centos.x86_64
    chkconfig-1.7.4-1.el7.x86_64 is a duplicate with chkconfig-1.7.2-1.el7_3.1.x86_64
    cpio-2.11-25.el7_4.x86_64 is a duplicate with cpio-2.11-24.el7.x86_64
    cpp-4.8.5-16.el7.x86_64 is a duplicate with cpp-4.8.5-11.el7.x86_64
    cronie-1.4.11-17.el7.x86_64 is a duplicate with cronie-1.4.11-14.el7_2.1.x86_64
    cronie-anacron-1.4.11-17.el7.x86_64 is a duplicate with cronie-anacron-1.4.11-14.el7_2.1.x86_64
    cryptsetup-libs-1.7.4-3.el7.x86_64 is a duplicate with cryptsetup-libs-1.7.2-1.el7.x86_64
    1:cups-libs-1.6.3-29.el7.x86_64 is a duplicate with 1:cups-libs-1.6.3-26.el7.x86_64
    curl-7.29.0-42.el7.x86_64 is a duplicate with curl-7.29.0-35.el7.centos.x86_64
    cyrus-imapd-utils-2.4.17-13.el7.x86_64 is a duplicate with cyrus-imapd-utils-2.4.17-8.el7_3.1.x86_64
    cyrus-sasl-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-2.1.26-20.el7_2.x86_64
    cyrus-sasl-devel-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-devel-2.1.26-20.el7_2.x86_64
    cyrus-sasl-lib-2.1.26-21.el7.x86_64 is a duplicate with cyrus-sasl-lib-2.1.26-20.el7_2.x86_64
    7:device-mapper-1.02.140-8.el7.x86_64 is a duplicate with 7:device-mapper-1.02.135-1.el7_3.5.x86_64
    7:device-mapper-libs-1.02.140-8.el7.x86_64 is a duplicate with 7:device-mapper-libs-1.02.135-1.el7_3.5.x86_64
    12:dhclient-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhclient-4.2.5-47.el7.centos.x86_64
    12:dhcp-common-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhcp-common-4.2.5-47.el7.centos.x86_64
    12:dhcp-libs-4.2.5-58.el7.centos.x86_64 is a duplicate with 12:dhcp-libs-4.2.5-47.el7.centos.x86_64
    1:dmidecode-3.0-5.el7.x86_64 is a duplicate with 1:dmidecode-3.0-2.1.el7_3.x86_64
    dracut-033-502.el7.x86_64 is a duplicate with dracut-033-463.el7_3.2.x86_64
    dracut-network-033-502.el7.x86_64 is a duplicate with dracut-network-033-463.el7_3.2.x86_64
    e2fsprogs-1.42.9-10.el7.x86_64 is a duplicate with e2fsprogs-1.42.9-9.el7.x86_64
    e2fsprogs-libs-1.42.9-10.el7.x86_64 is a duplicate with e2fsprogs-libs-1.42.9-9.el7.x86_64
    elfutils-libelf-0.168-8.el7.x86_64 is a duplicate with elfutils-libelf-0.166-2.el7.x86_64
    elfutils-libelf-devel-0.168-8.el7.x86_64 is a duplicate with elfutils-libelf-devel-0.166-2.el7.x86_64
    elfutils-libs-0.168-8.el7.x86_64 is a duplicate with elfutils-libs-0.166-2.el7.x86_64
    2:ethtool-4.8-1.el7.x86_64 is a duplicate with 2:ethtool-4.5-3.el7.x86_64
    fipscheck-1.4.1-6.el7.x86_64 is a duplicate with fipscheck-1.4.1-5.el7.x86_64
    fipscheck-lib-1.4.1-6.el7.x86_64 is a duplicate with fipscheck-lib-1.4.1-5.el7.x86_64
    fontconfig-2.10.95-11.el7.x86_64 is a duplicate with fontconfig-2.10.95-10.el7.x86_64
    freetype-2.4.11-15.el7.x86_64 is a duplicate with freetype-2.4.11-12.el7.x86_64
    freetype-devel-2.4.11-15.el7.x86_64 is a duplicate with freetype-devel-2.4.11-12.el7.x86_64
    gcc-4.8.5-16.el7.x86_64 is a duplicate with gcc-4.8.5-11.el7.x86_64
    gdk-pixbuf2-2.36.5-1.el7.x86_64 is a duplicate with gdk-pixbuf2-2.31.6-3.el7.x86_64
    gettext-0.19.8.1-2.el7.x86_64 is a duplicate with gettext-0.18.2.1-4.el7.x86_64
    gettext-common-devel-0.19.8.1-2.el7.noarch is a duplicate with gettext-common-devel-0.18.2.1-4.el7.noarch
    gettext-libs-0.19.8.1-2.el7.x86_64 is a duplicate with gettext-libs-0.18.2.1-4.el7.x86_64
    ghostscript-9.07-28.el7_4.2.x86_64 is a duplicate with ghostscript-9.07-20.el7_3.7.x86_64
    git-1.8.3.1-12.el7_4.x86_64 is a duplicate with git-1.8.3.1-6.el7_2.1.x86_64
    glib2-2.50.3-3.el7.x86_64 is a duplicate with glib2-2.46.2-4.el7.x86_64
    glibc-2.17-196.el7.x86_64 is a duplicate with glibc-2.17-157.el7_3.5.x86_64
    glibc-common-2.17-196.el7.x86_64 is a duplicate with glibc-common-2.17-157.el7_3.5.x86_64
    glibc-devel-2.17-196.el7.x86_64 is a duplicate with glibc-devel-2.17-157.el7_3.5.x86_64
    glibc-headers-2.17-196.el7.x86_64 is a duplicate with glibc-headers-2.17-157.el7_3.5.x86_64
    1:gmp-6.0.0-15.el7.x86_64 is a duplicate with 1:gmp-6.0.0-12.el7_1.x86_64
    gobject-introspection-1.50.0-1.el7.x86_64 is a duplicate with gobject-introspection-1.42.0-1.el7.x86_64
    grep-2.20-3.el7.x86_64 is a duplicate with grep-2.20-2.el7.x86_64
    grubby-8.28-23.el7.x86_64 is a duplicate with grubby-8.28-21.el7_3.x86_64
    gsettings-desktop-schemas-3.22.0-1.el7.x86_64 is a duplicate with gsettings-desktop-schemas-3.14.2-1.el7.x86_64
    gzip-1.5-9.el7.x86_64 is a duplicate with gzip-1.5-8.el7.x86_64
    harfbuzz-1.3.2-1.el7.x86_64 is a duplicate with harfbuzz-0.9.36-1.el7.x86_64
    hwdata-0.252-8.6.el7.x86_64 is a duplicate with hwdata-0.252-8.4.el7.x86_64
    initscripts-9.49.39-1.el7.x86_64 is a duplicate with initscripts-9.49.37-1.el7_3.1.x86_64
    iproute-3.10.0-87.el7.x86_64 is a duplicate with iproute-3.10.0-74.el7.x86_64
    ipset-libs-6.29-1.el7.x86_64 is a duplicate with ipset-libs-6.19-6.el7.x86_64
    iptables-1.4.21-18.0.1.el7.centos.x86_64 is a duplicate with iptables-1.4.21-17.el7.x86_64
    iputils-20160308-10.el7.x86_64 is a duplicate with iputils-20160308-8.el7.x86_64
    jansson-2.10-1.el7.x86_64 is a duplicate with jansson-2.4-6.el7.x86_64
    jasper-libs-1.900.1-31.el7.x86_64 is a duplicate with jasper-libs-1.900.1-30.el7_3.x86_64
    kbd-legacy-1.15.5-13.el7.noarch is a duplicate with kbd-legacy-1.15.5-12.el7.noarch
    kernel-headers-3.10.0-693.2.2.el7.x86_64 is a duplicate with kernel-headers-3.10.0-514.26.2.el7.x86_64
    kernel-tools-libs-3.10.0-693.2.2.el7.x86_64 is a duplicate with kernel-tools-libs-3.10.0-514.26.2.el7.x86_64
    kmod-20-15.el7_4.2.x86_64 is a duplicate with kmod-20-9.el7.x86_64
    kmod-libs-20-15.el7_4.2.x86_64 is a duplicate with kmod-libs-20-9.el7.x86_64
    kpartx-0.4.9-111.el7.x86_64 is a duplicate with kpartx-0.4.9-99.el7_3.3.x86_64
    krb5-devel-1.15.1-8.el7.x86_64 is a duplicate with krb5-devel-1.14.1-27.el7_3.x86_64
    krb5-libs-1.15.1-8.el7.x86_64 is a duplicate with krb5-libs-1.14.1-27.el7_3.x86_64
    libICE-1.0.9-9.el7.x86_64 is a duplicate with libICE-1.0.9-2.el7.x86_64
    libICE-devel-1.0.9-9.el7.x86_64 is a duplicate with libICE-devel-1.0.9-2.el7.x86_64
    libX11-1.6.5-1.el7.x86_64 is a duplicate with libX11-1.6.3-3.el7.x86_64
    libX11-common-1.6.5-1.el7.noarch is a duplicate with libX11-common-1.6.3-3.el7.noarch
    libX11-devel-1.6.5-1.el7.x86_64 is a duplicate with libX11-devel-1.6.3-3.el7.x86_64
    libXcursor-1.1.14-8.el7.x86_64 is a duplicate with libXcursor-1.1.14-2.1.el7.x86_64
    libXfixes-5.0.3-1.el7.x86_64 is a duplicate with libXfixes-5.0.1-2.1.el7.x86_64
    libXfixes-devel-5.0.3-1.el7.x86_64 is a duplicate with libXfixes-devel-5.0.1-2.1.el7.x86_64
    libXi-1.7.9-1.el7.x86_64 is a duplicate with libXi-1.7.4-2.el7.x86_64
    libXpm-3.5.12-1.el7.x86_64 is a duplicate with libXpm-3.5.11-3.el7.x86_64
    libXrandr-1.5.1-2.el7.x86_64 is a duplicate with libXrandr-1.4.2-2.el7.x86_64
    libXrender-0.9.10-1.el7.x86_64 is a duplicate with libXrender-0.9.8-2.1.el7.x86_64
    libXt-1.1.5-3.el7.x86_64 is a duplicate with libXt-1.1.4-6.1.el7.x86_64
    libXxf86vm-1.1.4-1.el7.x86_64 is a duplicate with libXxf86vm-1.1.3-2.1.el7.x86_64
    libXxf86vm-devel-1.1.4-1.el7.x86_64 is a duplicate with libXxf86vm-devel-1.1.3-2.1.el7.x86_64
    libblkid-2.23.2-43.el7.x86_64 is a duplicate with libblkid-2.23.2-33.el7_3.2.x86_64
    libcap-2.22-9.el7.x86_64 is a duplicate with libcap-2.22-8.el7.x86_64
    libcom_err-1.42.9-10.el7.x86_64 is a duplicate with libcom_err-1.42.9-9.el7.x86_64
    libcom_err-devel-1.42.9-10.el7.x86_64 is a duplicate with libcom_err-devel-1.42.9-9.el7.x86_64
    libcroco-0.6.11-1.el7.x86_64 is a duplicate with libcroco-0.6.8-5.el7.x86_64
    libcurl-7.29.0-42.el7.x86_64 is a duplicate with libcurl-7.29.0-35.el7.centos.x86_64
    libdb-5.3.21-20.el7.x86_64 is a duplicate with libdb-5.3.21-19.el7.x86_64
    libdb-devel-5.3.21-20.el7.x86_64 is a duplicate with libdb-devel-5.3.21-19.el7.x86_64
    libdb-utils-5.3.21-20.el7.x86_64 is a duplicate with libdb-utils-5.3.21-19.el7.x86_64
    libdrm-2.4.74-1.el7.x86_64 is a duplicate with libdrm-2.4.67-3.el7.x86_64
    libdrm-devel-2.4.74-1.el7.x86_64 is a duplicate with libdrm-devel-2.4.67-3.el7.x86_64
    libfontenc-1.1.3-3.el7.x86_64 is a duplicate with libfontenc-1.1.2-3.el7.x86_64
    libgcc-4.8.5-16.el7.x86_64 is a duplicate with libgcc-4.8.5-11.el7.x86_64
    libgcrypt-1.5.3-14.el7.x86_64 is a duplicate with libgcrypt-1.5.3-13.el7_3.1.x86_64
    libgnome-keyring-3.12.0-1.el7.x86_64 is a duplicate with libgnome-keyring-3.8.0-3.el7.x86_64
    libgomp-4.8.5-16.el7.x86_64 is a duplicate with libgomp-4.8.5-11.el7.x86_64
    libibverbs-13-7.el7.x86_64 is a duplicate with libibverbs-1.2.1-1.el7.x86_64
    libkadm5-1.15.1-8.el7.x86_64 is a duplicate with libkadm5-1.14.1-27.el7_3.x86_64
    libmount-2.23.2-43.el7.x86_64 is a duplicate with libmount-2.23.2-33.el7_3.2.x86_64
    libnl3-3.2.28-4.el7.x86_64 is a duplicate with libnl3-3.2.28-3.el7_3.x86_64
    1:librados2-0.94.5-2.el7.x86_64 is a duplicate with 1:librados2-0.94.5-1.el7.x86_64
    libselinux-2.5-11.el7.x86_64 is a duplicate with libselinux-2.5-6.el7.x86_64
    libselinux-devel-2.5-11.el7.x86_64 is a duplicate with libselinux-devel-2.5-6.el7.x86_64
    libselinux-utils-2.5-11.el7.x86_64 is a duplicate with libselinux-utils-2.5-6.el7.x86_64
    libsemanage-2.5-8.el7.x86_64 is a duplicate with libsemanage-2.5-5.1.el7_3.x86_64
    libss-1.42.9-10.el7.x86_64 is a duplicate with libss-1.42.9-9.el7.x86_64
    libstdc++-4.8.5-16.el7.x86_64 is a duplicate with libstdc++-4.8.5-11.el7.x86_64
    libstdc++-devel-4.8.5-16.el7.x86_64 is a duplicate with libstdc++-devel-4.8.5-11.el7.x86_64
    libtasn1-4.10-1.el7.x86_64 is a duplicate with libtasn1-3.8-3.el7.x86_64
    libuuid-2.23.2-43.el7.x86_64 is a duplicate with libuuid-2.23.2-33.el7_3.2.x86_64
    libwebp-0.3.0-7.el7.x86_64 is a duplicate with libwebp-0.3.0-3.el7.x86_64
    libxcb-1.12-1.el7.x86_64 is a duplicate with libxcb-1.11-4.el7.x86_64
    libxcb-devel-1.12-1.el7.x86_64 is a duplicate with libxcb-devel-1.11-4.el7.x86_64
    linux-firmware-20170606-56.gitc990aae.el7.noarch is a duplicate with linux-firmware-20160830-49.git7534e19.el7.noarch
    logrotate-3.8.6-14.el7.x86_64 is a duplicate with logrotate-3.8.6-12.el7.x86_64
    lsscsi-0.27-6.el7.x86_64 is a duplicate with lsscsi-0.27-4.el7.x86_64
    mesa-libEGL-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libEGL-11.2.2-2.20160614.el7.x86_64
    mesa-libGL-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libGL-11.2.2-2.20160614.el7.x86_64
    mesa-libgbm-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libgbm-11.2.2-2.20160614.el7.x86_64
    mesa-libglapi-17.0.1-6.20170307.el7.x86_64 is a duplicate with mesa-libglapi-11.2.2-2.20160614.el7.x86_64
    ncurses-base-5.9-14.20130511.el7_4.noarch is a duplicate with ncurses-base-5.9-13.20130511.el7.noarch
    ncurses-devel-5.9-14.20130511.el7_4.x86_64 is a duplicate with ncurses-devel-5.9-13.20130511.el7.x86_64
    ncurses-libs-5.9-14.20130511.el7_4.x86_64 is a duplicate with ncurses-libs-5.9-13.20130511.el7.x86_64
    1:net-snmp-agent-libs-5.7.2-28.el7.x86_64 is a duplicate with 1:net-snmp-agent-libs-5.7.2-24.el7_3.2.x86_64
    1:net-snmp-libs-5.7.2-28.el7.x86_64 is a duplicate with 1:net-snmp-libs-5.7.2-24.el7_3.2.x86_64
    nss-softokn-3.28.3-8.el7_4.x86_64 is a duplicate with nss-softokn-3.16.2.3-14.4.el7.x86_64
    nss-softokn-freebl-3.28.3-8.el7_4.x86_64 is a duplicate with nss-softokn-freebl-3.16.2.3-14.4.el7.x86_64
    nss-util-3.28.4-3.el7.x86_64 is a duplicate with nss-util-3.28.4-1.0.el7_3.x86_64
    openldap-2.4.44-5.el7.x86_64 is a duplicate with openldap-2.4.40-13.el7.x86_64
    openssh-7.4p1-12.el7_4.x86_64 is a duplicate with openssh-6.6.1p1-35.el7_3.x86_64
    openssh-clients-7.4p1-12.el7_4.x86_64 is a duplicate with openssh-clients-6.6.1p1-35.el7_3.x86_64
    1:openssl-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-1.0.1e-60.el7_3.1.x86_64
    1:openssl-devel-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-devel-1.0.1e-60.el7_3.1.x86_64
    1:openssl-libs-1.0.2k-8.el7.x86_64 is a duplicate with 1:openssl-libs-1.0.1e-60.el7_3.1.x86_64
    p11-kit-0.23.5-3.el7.x86_64 is a duplicate with p11-kit-0.20.7-3.el7.x86_64
    p11-kit-trust-0.23.5-3.el7.x86_64 is a duplicate with p11-kit-trust-0.20.7-3.el7.x86_64
    pango-1.40.4-1.el7.x86_64 is a duplicate with pango-1.36.8-2.el7.x86_64
    pciutils-3.5.1-2.el7.x86_64 is a duplicate with pciutils-3.5.1-1.el7.x86_64
    pciutils-libs-3.5.1-2.el7.x86_64 is a duplicate with pciutils-libs-3.5.1-1.el7.x86_64
    pcre-8.32-17.el7.x86_64 is a duplicate with pcre-8.32-15.el7_2.1.x86_64
    pcre-devel-8.32-17.el7.x86_64 is a duplicate with pcre-devel-8.32-15.el7_2.1.x86_64
    4:perl-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-5.16.3-291.el7.x86_64
    perl-ExtUtils-Install-1.58-292.el7.noarch is a duplicate with perl-ExtUtils-Install-1.58-291.el7.noarch
    1:perl-ExtUtils-ParseXS-3.18-3.el7.noarch is a duplicate with 1:perl-ExtUtils-ParseXS-3.18-2.el7.noarch
    perl-Git-1.8.3.1-12.el7_4.noarch is a duplicate with perl-Git-1.8.3.1-6.el7_2.1.noarch
    perl-Net-SSLeay-1.55-6.el7.x86_64 is a duplicate with perl-Net-SSLeay-1.55-4.el7.x86_64
    4:perl-devel-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-devel-5.16.3-291.el7.x86_64
    4:perl-libs-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-libs-5.16.3-291.el7.x86_64
    4:perl-macros-5.16.3-292.el7.x86_64 is a duplicate with 4:perl-macros-5.16.3-291.el7.x86_64
    policycoreutils-2.5-17.1.el7.x86_64 is a duplicate with policycoreutils-2.5-11.el7_3.x86_64
    procps-ng-3.3.10-16.el7.x86_64 is a duplicate with procps-ng-3.3.10-10.el7.x86_64
    python-2.7.5-58.el7.x86_64 is a duplicate with python-2.7.5-48.el7.x86_64
    python-libs-2.7.5-58.el7.x86_64 is a duplicate with python-libs-2.7.5-48.el7.x86_64
    python-perf-3.10.0-693.2.2.el7.x86_64 is a duplicate with python-perf-3.10.0-514.26.2.el7.x86_64
    readline-6.2-10.el7.x86_64 is a duplicate with readline-6.2-9.el7.x86_64
    rpm-4.11.3-25.el7.x86_64 is a duplicate with rpm-4.11.3-21.el7.x86_64
    rpm-build-libs-4.11.3-25.el7.x86_64 is a duplicate with rpm-build-libs-4.11.3-21.el7.x86_64
    rpm-devel-4.11.3-25.el7.x86_64 is a duplicate with rpm-devel-4.11.3-21.el7.x86_64
    rpm-libs-4.11.3-25.el7.x86_64 is a duplicate with rpm-libs-4.11.3-21.el7.x86_64
    rpm-python-4.11.3-25.el7.x86_64 is a duplicate with rpm-python-4.11.3-21.el7.x86_64
    rsync-3.0.9-18.el7.x86_64 is a duplicate with rsync-3.0.9-17.el7.x86_64
    shared-mime-info-1.8-3.el7.x86_64 is a duplicate with shared-mime-info-1.1-9.el7.x86_64
    subversion-libs-1.7.14-11.el7_4.x86_64 is a duplicate with subversion-libs-1.7.14-10.el7.x86_64
    systemd-219-42.el7_4.1.x86_64 has installed conflicts dracut < ('0', '033', '499'): dracut-033-463.el7_3.2.x86_64
    systemd-219-42.el7_4.1.x86_64 is a duplicate with systemd-219-30.el7_3.9.x86_64
    systemd-libs-219-42.el7_4.1.x86_64 is a duplicate with systemd-libs-219-30.el7_3.9.x86_64
    systemd-sysv-219-42.el7_4.1.x86_64 is a duplicate with systemd-sysv-219-30.el7_3.9.x86_64
    systemtap-sdt-devel-3.1-3.el7.x86_64 is a duplicate with systemtap-sdt-devel-3.0-7.el7.x86_64
    2:tar-1.26-32.el7.x86_64 is a duplicate with 2:tar-1.26-31.el7.x86_64
    util-linux-2.23.2-43.el7.x86_64 is a duplicate with util-linux-2.23.2-33.el7_3.2.x86_64
    2:vim-minimal-7.4.160-2.el7.x86_64 is a duplicate with 2:vim-minimal-7.4.160-1.el7_3.1.x86_64
    virt-what-1.13-10.el7.x86_64 is a duplicate with virt-what-1.13-8.el7.x86_64
    1:wpa_supplicant-2.6-5.el7.x86_64 is a duplicate with 1:wpa_supplicant-2.0-21.el7_3.x86_64
    xorg-x11-proto-devel-7.7-20.el7.noarch is a duplicate with xorg-x11-proto-devel-7.7-13.el7.noarch
    yum-3.4.3-154.el7.centos.noarch is a duplicate with yum-3.4.3-150.el7.centos.noarch
    yum-plugin-fastestmirror-1.1.31-42.el7.noarch is a duplicate with yum-plugin-fastestmirror-1.1.31-40.el7.noarch
    

    then parse that text file for the newest packages listed on the 1st field of each line

    filter yum-update-dupes.txt and parse for lines with X: in front where X is an integer
    Code (Text):
    grep ':' yum-update-dupes.txt | grep duplicate | awk -F ":" '{print $2}' | awk '{print $1}'
    

    Code (Text):
    grep ':' yum-update-dupes.txt | grep duplicate | awk -F ":" '{print $2}' | awk '{print $1}'
    NetworkManager-1.8.0-9.el7.x86_64
    NetworkManager-libnm-1.8.0-9.el7.x86_64
    bind-libs-9.9.4-51.el7.x86_64
    bind-libs-lite-9.9.4-51.el7.x86_64
    bind-license-9.9.4-51.el7.noarch
    cups-libs-1.6.3-29.el7.x86_64
    device-mapper-1.02.140-8.el7.x86_64
    device-mapper-libs-1.02.140-8.el7.x86_64
    dhclient-4.2.5-58.el7.centos.x86_64
    dhcp-common-4.2.5-58.el7.centos.x86_64
    dhcp-libs-4.2.5-58.el7.centos.x86_64
    dmidecode-3.0-5.el7.x86_64
    ethtool-4.8-1.el7.x86_64
    gmp-6.0.0-15.el7.x86_64
    librados2-0.94.5-2.el7.x86_64
    net-snmp-agent-libs-5.7.2-28.el7.x86_64
    net-snmp-libs-5.7.2-28.el7.x86_64
    openssl-1.0.2k-8.el7.x86_64
    openssl-devel-1.0.2k-8.el7.x86_64
    openssl-libs-1.0.2k-8.el7.x86_64
    perl-5.16.3-292.el7.x86_64
    perl-ExtUtils-ParseXS-3.18-3.el7.noarch
    perl-devel-5.16.3-292.el7.x86_64
    perl-libs-5.16.3-292.el7.x86_64
    perl-macros-5.16.3-292.el7.x86_64
    tar-1.26-32.el7.x86_64
    vim-minimal-7.4.160-2.el7.x86_64
    wpa_supplicant-2.6-5.el7.x86_64
    

    filter yum-update-dupes.txt and parse for lines without X: in front where X is an integer
    Code (Text):
    grep -v ':' yum-update-dupes.txt | grep duplicate | awk '{print $1}'
    

    Code (Text):
    grep -v ':' yum-update-dupes.txt | grep duplicate | awk '{print $1}'                       
    atk-2.22.0-3.el7.x86_64
    audit-libs-2.7.6-3.el7.x86_64
    bash-4.2.46-29.el7_4.x86_64
    binutils-2.25.1-32.base.el7_4.1.x86_64
    bluez-libs-5.44-4.el7_4.x86_64
    boost-system-1.53.0-27.el7.x86_64
    boost-thread-1.53.0-27.el7.x86_64
    ca-certificates-2017.2.14-71.el7.noarch
    cairo-1.14.8-2.el7.x86_64
    centos-release-7-4.1708.el7.centos.x86_64
    chkconfig-1.7.4-1.el7.x86_64
    cpio-2.11-25.el7_4.x86_64
    cpp-4.8.5-16.el7.x86_64
    cronie-1.4.11-17.el7.x86_64
    cronie-anacron-1.4.11-17.el7.x86_64
    cryptsetup-libs-1.7.4-3.el7.x86_64
    curl-7.29.0-42.el7.x86_64
    cyrus-imapd-utils-2.4.17-13.el7.x86_64
    cyrus-sasl-2.1.26-21.el7.x86_64
    cyrus-sasl-devel-2.1.26-21.el7.x86_64
    cyrus-sasl-lib-2.1.26-21.el7.x86_64
    dracut-033-502.el7.x86_64
    dracut-network-033-502.el7.x86_64
    e2fsprogs-1.42.9-10.el7.x86_64
    e2fsprogs-libs-1.42.9-10.el7.x86_64
    elfutils-libelf-0.168-8.el7.x86_64
    elfutils-libelf-devel-0.168-8.el7.x86_64
    elfutils-libs-0.168-8.el7.x86_64
    fipscheck-1.4.1-6.el7.x86_64
    fipscheck-lib-1.4.1-6.el7.x86_64
    fontconfig-2.10.95-11.el7.x86_64
    freetype-2.4.11-15.el7.x86_64
    freetype-devel-2.4.11-15.el7.x86_64
    gcc-4.8.5-16.el7.x86_64
    gdk-pixbuf2-2.36.5-1.el7.x86_64
    gettext-0.19.8.1-2.el7.x86_64
    gettext-common-devel-0.19.8.1-2.el7.noarch
    gettext-libs-0.19.8.1-2.el7.x86_64
    ghostscript-9.07-28.el7_4.2.x86_64
    git-1.8.3.1-12.el7_4.x86_64
    glib2-2.50.3-3.el7.x86_64
    glibc-2.17-196.el7.x86_64
    glibc-common-2.17-196.el7.x86_64
    glibc-devel-2.17-196.el7.x86_64
    glibc-headers-2.17-196.el7.x86_64
    gobject-introspection-1.50.0-1.el7.x86_64
    grep-2.20-3.el7.x86_64
    grubby-8.28-23.el7.x86_64
    gsettings-desktop-schemas-3.22.0-1.el7.x86_64
    gzip-1.5-9.el7.x86_64
    harfbuzz-1.3.2-1.el7.x86_64
    hwdata-0.252-8.6.el7.x86_64
    initscripts-9.49.39-1.el7.x86_64
    iproute-3.10.0-87.el7.x86_64
    ipset-libs-6.29-1.el7.x86_64
    iptables-1.4.21-18.0.1.el7.centos.x86_64
    iputils-20160308-10.el7.x86_64
    jansson-2.10-1.el7.x86_64
    jasper-libs-1.900.1-31.el7.x86_64
    kbd-legacy-1.15.5-13.el7.noarch
    kernel-headers-3.10.0-693.2.2.el7.x86_64
    kernel-tools-libs-3.10.0-693.2.2.el7.x86_64
    kmod-20-15.el7_4.2.x86_64
    kmod-libs-20-15.el7_4.2.x86_64
    kpartx-0.4.9-111.el7.x86_64
    krb5-devel-1.15.1-8.el7.x86_64
    krb5-libs-1.15.1-8.el7.x86_64
    libICE-1.0.9-9.el7.x86_64
    libICE-devel-1.0.9-9.el7.x86_64
    libX11-1.6.5-1.el7.x86_64
    libX11-common-1.6.5-1.el7.noarch
    libX11-devel-1.6.5-1.el7.x86_64
    libXcursor-1.1.14-8.el7.x86_64
    libXfixes-5.0.3-1.el7.x86_64
    libXfixes-devel-5.0.3-1.el7.x86_64
    libXi-1.7.9-1.el7.x86_64
    libXpm-3.5.12-1.el7.x86_64
    libXrandr-1.5.1-2.el7.x86_64
    libXrender-0.9.10-1.el7.x86_64
    libXt-1.1.5-3.el7.x86_64
    libXxf86vm-1.1.4-1.el7.x86_64
    libXxf86vm-devel-1.1.4-1.el7.x86_64
    libblkid-2.23.2-43.el7.x86_64
    libcap-2.22-9.el7.x86_64
    libcom_err-1.42.9-10.el7.x86_64
    libcom_err-devel-1.42.9-10.el7.x86_64
    libcroco-0.6.11-1.el7.x86_64
    libcurl-7.29.0-42.el7.x86_64
    libdb-5.3.21-20.el7.x86_64
    libdb-devel-5.3.21-20.el7.x86_64
    libdb-utils-5.3.21-20.el7.x86_64
    libdrm-2.4.74-1.el7.x86_64
    libdrm-devel-2.4.74-1.el7.x86_64
    libfontenc-1.1.3-3.el7.x86_64
    libgcc-4.8.5-16.el7.x86_64
    libgcrypt-1.5.3-14.el7.x86_64
    libgnome-keyring-3.12.0-1.el7.x86_64
    libgomp-4.8.5-16.el7.x86_64
    libibverbs-13-7.el7.x86_64
    libkadm5-1.15.1-8.el7.x86_64
    libmount-2.23.2-43.el7.x86_64
    libnl3-3.2.28-4.el7.x86_64
    libselinux-2.5-11.el7.x86_64
    libselinux-devel-2.5-11.el7.x86_64
    libselinux-utils-2.5-11.el7.x86_64
    libsemanage-2.5-8.el7.x86_64
    libss-1.42.9-10.el7.x86_64
    libstdc++-4.8.5-16.el7.x86_64
    libstdc++-devel-4.8.5-16.el7.x86_64
    libtasn1-4.10-1.el7.x86_64
    libuuid-2.23.2-43.el7.x86_64
    libwebp-0.3.0-7.el7.x86_64
    libxcb-1.12-1.el7.x86_64
    libxcb-devel-1.12-1.el7.x86_64
    linux-firmware-20170606-56.gitc990aae.el7.noarch
    logrotate-3.8.6-14.el7.x86_64
    lsscsi-0.27-6.el7.x86_64
    mesa-libEGL-17.0.1-6.20170307.el7.x86_64
    mesa-libGL-17.0.1-6.20170307.el7.x86_64
    mesa-libgbm-17.0.1-6.20170307.el7.x86_64
    mesa-libglapi-17.0.1-6.20170307.el7.x86_64
    ncurses-base-5.9-14.20130511.el7_4.noarch
    ncurses-devel-5.9-14.20130511.el7_4.x86_64
    ncurses-libs-5.9-14.20130511.el7_4.x86_64
    nss-softokn-3.28.3-8.el7_4.x86_64
    nss-softokn-freebl-3.28.3-8.el7_4.x86_64
    nss-util-3.28.4-3.el7.x86_64
    openldap-2.4.44-5.el7.x86_64
    openssh-7.4p1-12.el7_4.x86_64
    openssh-clients-7.4p1-12.el7_4.x86_64
    p11-kit-0.23.5-3.el7.x86_64
    p11-kit-trust-0.23.5-3.el7.x86_64
    pango-1.40.4-1.el7.x86_64
    pciutils-3.5.1-2.el7.x86_64
    pciutils-libs-3.5.1-2.el7.x86_64
    pcre-8.32-17.el7.x86_64
    pcre-devel-8.32-17.el7.x86_64
    perl-ExtUtils-Install-1.58-292.el7.noarch
    perl-Git-1.8.3.1-12.el7_4.noarch
    perl-Net-SSLeay-1.55-6.el7.x86_64
    policycoreutils-2.5-17.1.el7.x86_64
    procps-ng-3.3.10-16.el7.x86_64
    python-2.7.5-58.el7.x86_64
    python-libs-2.7.5-58.el7.x86_64
    python-perf-3.10.0-693.2.2.el7.x86_64
    readline-6.2-10.el7.x86_64
    rpm-4.11.3-25.el7.x86_64
    rpm-build-libs-4.11.3-25.el7.x86_64
    rpm-devel-4.11.3-25.el7.x86_64
    rpm-libs-4.11.3-25.el7.x86_64
    rpm-python-4.11.3-25.el7.x86_64
    rsync-3.0.9-18.el7.x86_64
    shared-mime-info-1.8-3.el7.x86_64
    subversion-libs-1.7.14-11.el7_4.x86_64
    systemd-219-42.el7_4.1.x86_64
    systemd-libs-219-42.el7_4.1.x86_64
    systemd-sysv-219-42.el7_4.1.x86_64
    systemtap-sdt-devel-3.1-3.el7.x86_64
    util-linux-2.23.2-43.el7.x86_64
    virt-what-1.13-10.el7.x86_64
    xorg-x11-proto-devel-7.7-20.el7.noarch
    yum-3.4.3-154.el7.centos.noarch
    yum-plugin-fastestmirror-1.1.31-42.el7.noarch
    

    combine the parsed newest yum packages reported as being duplicate so you can pipe them into a listnew-pkgs.txt file
    Code (Text):
    grep ':' yum-update-dupes.txt | grep duplicate | awk -F ":" '{print $2}' | awk '{print $1}' >> listnew-pkgs.txt
    

    Code (Text):
    grep -v ':' yum-update-dupes.txt | grep duplicate | awk '{print $1}' >> listnew-pkgs.txt 
    

    Then sort and list listnew-pkgs.txt contents
    Code (Text):
    sort listnew-pkgs.txt
    

    Code (Text):
    sort listnew-pkgs.txt
    atk-2.22.0-3.el7.x86_64
    audit-libs-2.7.6-3.el7.x86_64
    bash-4.2.46-29.el7_4.x86_64
    bind-libs-9.9.4-51.el7.x86_64
    bind-libs-lite-9.9.4-51.el7.x86_64
    bind-license-9.9.4-51.el7.noarch
    binutils-2.25.1-32.base.el7_4.1.x86_64
    bluez-libs-5.44-4.el7_4.x86_64
    boost-system-1.53.0-27.el7.x86_64
    boost-thread-1.53.0-27.el7.x86_64
    ca-certificates-2017.2.14-71.el7.noarch
    cairo-1.14.8-2.el7.x86_64
    centos-release-7-4.1708.el7.centos.x86_64
    chkconfig-1.7.4-1.el7.x86_64
    cpio-2.11-25.el7_4.x86_64
    cpp-4.8.5-16.el7.x86_64
    cronie-1.4.11-17.el7.x86_64
    cronie-anacron-1.4.11-17.el7.x86_64
    cryptsetup-libs-1.7.4-3.el7.x86_64
    cups-libs-1.6.3-29.el7.x86_64
    curl-7.29.0-42.el7.x86_64
    cyrus-imapd-utils-2.4.17-13.el7.x86_64
    cyrus-sasl-2.1.26-21.el7.x86_64
    cyrus-sasl-devel-2.1.26-21.el7.x86_64
    cyrus-sasl-lib-2.1.26-21.el7.x86_64
    device-mapper-1.02.140-8.el7.x86_64
    device-mapper-libs-1.02.140-8.el7.x86_64
    dhclient-4.2.5-58.el7.centos.x86_64
    dhcp-common-4.2.5-58.el7.centos.x86_64
    dhcp-libs-4.2.5-58.el7.centos.x86_64
    dmidecode-3.0-5.el7.x86_64
    dracut-033-502.el7.x86_64
    dracut-network-033-502.el7.x86_64
    e2fsprogs-1.42.9-10.el7.x86_64
    e2fsprogs-libs-1.42.9-10.el7.x86_64
    elfutils-libelf-0.168-8.el7.x86_64
    elfutils-libelf-devel-0.168-8.el7.x86_64
    elfutils-libs-0.168-8.el7.x86_64
    ethtool-4.8-1.el7.x86_64
    fipscheck-1.4.1-6.el7.x86_64
    fipscheck-lib-1.4.1-6.el7.x86_64
    fontconfig-2.10.95-11.el7.x86_64
    freetype-2.4.11-15.el7.x86_64
    freetype-devel-2.4.11-15.el7.x86_64
    gcc-4.8.5-16.el7.x86_64
    gdk-pixbuf2-2.36.5-1.el7.x86_64
    gettext-0.19.8.1-2.el7.x86_64
    gettext-common-devel-0.19.8.1-2.el7.noarch
    gettext-libs-0.19.8.1-2.el7.x86_64
    ghostscript-9.07-28.el7_4.2.x86_64
    git-1.8.3.1-12.el7_4.x86_64
    glib2-2.50.3-3.el7.x86_64
    glibc-2.17-196.el7.x86_64
    glibc-common-2.17-196.el7.x86_64
    glibc-devel-2.17-196.el7.x86_64
    glibc-headers-2.17-196.el7.x86_64
    gmp-6.0.0-15.el7.x86_64
    gobject-introspection-1.50.0-1.el7.x86_64
    grep-2.20-3.el7.x86_64
    grubby-8.28-23.el7.x86_64
    gsettings-desktop-schemas-3.22.0-1.el7.x86_64
    gzip-1.5-9.el7.x86_64
    harfbuzz-1.3.2-1.el7.x86_64
    hwdata-0.252-8.6.el7.x86_64
    initscripts-9.49.39-1.el7.x86_64
    iproute-3.10.0-87.el7.x86_64
    ipset-libs-6.29-1.el7.x86_64
    iptables-1.4.21-18.0.1.el7.centos.x86_64
    iputils-20160308-10.el7.x86_64
    jansson-2.10-1.el7.x86_64
    jasper-libs-1.900.1-31.el7.x86_64
    kbd-legacy-1.15.5-13.el7.noarch
    kernel-headers-3.10.0-693.2.2.el7.x86_64
    kernel-tools-libs-3.10.0-693.2.2.el7.x86_64
    kmod-20-15.el7_4.2.x86_64
    kmod-libs-20-15.el7_4.2.x86_64
    kpartx-0.4.9-111.el7.x86_64
    krb5-devel-1.15.1-8.el7.x86_64
    krb5-libs-1.15.1-8.el7.x86_64
    libblkid-2.23.2-43.el7.x86_64
    libcap-2.22-9.el7.x86_64
    libcom_err-1.42.9-10.el7.x86_64
    libcom_err-devel-1.42.9-10.el7.x86_64
    libcroco-0.6.11-1.el7.x86_64
    libcurl-7.29.0-42.el7.x86_64
    libdb-5.3.21-20.el7.x86_64
    libdb-devel-5.3.21-20.el7.x86_64
    libdb-utils-5.3.21-20.el7.x86_64
    libdrm-2.4.74-1.el7.x86_64
    libdrm-devel-2.4.74-1.el7.x86_64
    libfontenc-1.1.3-3.el7.x86_64
    libgcc-4.8.5-16.el7.x86_64
    libgcrypt-1.5.3-14.el7.x86_64
    libgnome-keyring-3.12.0-1.el7.x86_64
    libgomp-4.8.5-16.el7.x86_64
    libibverbs-13-7.el7.x86_64
    libICE-1.0.9-9.el7.x86_64
    libICE-devel-1.0.9-9.el7.x86_64
    libkadm5-1.15.1-8.el7.x86_64
    libmount-2.23.2-43.el7.x86_64
    libnl3-3.2.28-4.el7.x86_64
    librados2-0.94.5-2.el7.x86_64
    libselinux-2.5-11.el7.x86_64
    libselinux-devel-2.5-11.el7.x86_64
    libselinux-utils-2.5-11.el7.x86_64
    libsemanage-2.5-8.el7.x86_64
    libss-1.42.9-10.el7.x86_64
    libstdc++-4.8.5-16.el7.x86_64
    libstdc++-devel-4.8.5-16.el7.x86_64
    libtasn1-4.10-1.el7.x86_64
    libuuid-2.23.2-43.el7.x86_64
    libwebp-0.3.0-7.el7.x86_64
    libX11-1.6.5-1.el7.x86_64
    libX11-common-1.6.5-1.el7.noarch
    libX11-devel-1.6.5-1.el7.x86_64
    libxcb-1.12-1.el7.x86_64
    libxcb-devel-1.12-1.el7.x86_64
    libXcursor-1.1.14-8.el7.x86_64
    libXfixes-5.0.3-1.el7.x86_64
    libXfixes-devel-5.0.3-1.el7.x86_64
    libXi-1.7.9-1.el7.x86_64
    libXpm-3.5.12-1.el7.x86_64
    libXrandr-1.5.1-2.el7.x86_64
    libXrender-0.9.10-1.el7.x86_64
    libXt-1.1.5-3.el7.x86_64
    libXxf86vm-1.1.4-1.el7.x86_64
    libXxf86vm-devel-1.1.4-1.el7.x86_64
    linux-firmware-20170606-56.gitc990aae.el7.noarch
    logrotate-3.8.6-14.el7.x86_64
    lsscsi-0.27-6.el7.x86_64
    mesa-libEGL-17.0.1-6.20170307.el7.x86_64
    mesa-libgbm-17.0.1-6.20170307.el7.x86_64
    mesa-libGL-17.0.1-6.20170307.el7.x86_64
    mesa-libglapi-17.0.1-6.20170307.el7.x86_64
    ncurses-base-5.9-14.20130511.el7_4.noarch
    ncurses-devel-5.9-14.20130511.el7_4.x86_64
    ncurses-libs-5.9-14.20130511.el7_4.x86_64
    net-snmp-agent-libs-5.7.2-28.el7.x86_64
    net-snmp-libs-5.7.2-28.el7.x86_64
    NetworkManager-1.8.0-9.el7.x86_64
    NetworkManager-libnm-1.8.0-9.el7.x86_64
    nss-softokn-3.28.3-8.el7_4.x86_64
    nss-softokn-freebl-3.28.3-8.el7_4.x86_64
    nss-util-3.28.4-3.el7.x86_64
    openldap-2.4.44-5.el7.x86_64
    openssh-7.4p1-12.el7_4.x86_64
    openssh-clients-7.4p1-12.el7_4.x86_64
    openssl-1.0.2k-8.el7.x86_64
    openssl-devel-1.0.2k-8.el7.x86_64
    openssl-libs-1.0.2k-8.el7.x86_64
    p11-kit-0.23.5-3.el7.x86_64
    p11-kit-trust-0.23.5-3.el7.x86_64
    pango-1.40.4-1.el7.x86_64
    pciutils-3.5.1-2.el7.x86_64
    pciutils-libs-3.5.1-2.el7.x86_64
    pcre-8.32-17.el7.x86_64
    pcre-devel-8.32-17.el7.x86_64
    perl-5.16.3-292.el7.x86_64
    perl-devel-5.16.3-292.el7.x86_64
    perl-ExtUtils-Install-1.58-292.el7.noarch
    perl-ExtUtils-ParseXS-3.18-3.el7.noarch
    perl-Git-1.8.3.1-12.el7_4.noarch
    perl-libs-5.16.3-292.el7.x86_64
    perl-macros-5.16.3-292.el7.x86_64
    perl-Net-SSLeay-1.55-6.el7.x86_64
    policycoreutils-2.5-17.1.el7.x86_64
    procps-ng-3.3.10-16.el7.x86_64
    python-2.7.5-58.el7.x86_64
    python-libs-2.7.5-58.el7.x86_64
    python-perf-3.10.0-693.2.2.el7.x86_64
    readline-6.2-10.el7.x86_64
    rpm-4.11.3-25.el7.x86_64
    rpm-build-libs-4.11.3-25.el7.x86_64
    rpm-devel-4.11.3-25.el7.x86_64
    rpm-libs-4.11.3-25.el7.x86_64
    rpm-python-4.11.3-25.el7.x86_64
    rsync-3.0.9-18.el7.x86_64
    shared-mime-info-1.8-3.el7.x86_64
    subversion-libs-1.7.14-11.el7_4.x86_64
    systemd-219-42.el7_4.1.x86_64
    systemd-libs-219-42.el7_4.1.x86_64
    systemd-sysv-219-42.el7_4.1.x86_64
    systemtap-sdt-devel-3.1-3.el7.x86_64
    tar-1.26-32.el7.x86_64
    util-linux-2.23.2-43.el7.x86_64
    vim-minimal-7.4.160-2.el7.x86_64
    virt-what-1.13-10.el7.x86_64
    wpa_supplicant-2.6-5.el7.x86_64
    xorg-x11-proto-devel-7.7-20.el7.noarch
    yum-3.4.3-154.el7.centos.noarch
    yum-plugin-fastestmirror-1.1.31-42.el7.noarch
    


    Then just remove them from rpm database via rpm -e --justdb --nodeps by piping sorted output through a while read loop to output the commands you need to run
    Code (Text):
    sort listnew-pkgs.txt | while read p; do echo "rpm -e --justdb --nodeps $p"; done
    

    output would be as follows for each command needed to remove newer duplicate yum package from database only
    Code (Text):
    sort listnew-pkgs.txt | while read p; do echo "rpm -e --justdb --nodeps $p"; done
    rpm -e --justdb --nodeps atk-2.22.0-3.el7.x86_64
    rpm -e --justdb --nodeps audit-libs-2.7.6-3.el7.x86_64
    rpm -e --justdb --nodeps bash-4.2.46-29.el7_4.x86_64
    rpm -e --justdb --nodeps bind-libs-9.9.4-51.el7.x86_64
    rpm -e --justdb --nodeps bind-libs-lite-9.9.4-51.el7.x86_64
    rpm -e --justdb --nodeps bind-license-9.9.4-51.el7.noarch
    rpm -e --justdb --nodeps binutils-2.25.1-32.base.el7_4.1.x86_64
    rpm -e --justdb --nodeps bluez-libs-5.44-4.el7_4.x86_64
    rpm -e --justdb --nodeps boost-system-1.53.0-27.el7.x86_64
    rpm -e --justdb --nodeps boost-thread-1.53.0-27.el7.x86_64
    rpm -e --justdb --nodeps ca-certificates-2017.2.14-71.el7.noarch
    rpm -e --justdb --nodeps cairo-1.14.8-2.el7.x86_64
    rpm -e --justdb --nodeps centos-release-7-4.1708.el7.centos.x86_64
    rpm -e --justdb --nodeps chkconfig-1.7.4-1.el7.x86_64
    rpm -e --justdb --nodeps cpio-2.11-25.el7_4.x86_64
    rpm -e --justdb --nodeps cpp-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps cronie-1.4.11-17.el7.x86_64
    rpm -e --justdb --nodeps cronie-anacron-1.4.11-17.el7.x86_64
    rpm -e --justdb --nodeps cryptsetup-libs-1.7.4-3.el7.x86_64
    rpm -e --justdb --nodeps cups-libs-1.6.3-29.el7.x86_64
    rpm -e --justdb --nodeps curl-7.29.0-42.el7.x86_64
    rpm -e --justdb --nodeps cyrus-imapd-utils-2.4.17-13.el7.x86_64
    rpm -e --justdb --nodeps cyrus-sasl-2.1.26-21.el7.x86_64
    rpm -e --justdb --nodeps cyrus-sasl-devel-2.1.26-21.el7.x86_64
    rpm -e --justdb --nodeps cyrus-sasl-lib-2.1.26-21.el7.x86_64
    rpm -e --justdb --nodeps device-mapper-1.02.140-8.el7.x86_64
    rpm -e --justdb --nodeps device-mapper-libs-1.02.140-8.el7.x86_64
    rpm -e --justdb --nodeps dhclient-4.2.5-58.el7.centos.x86_64
    rpm -e --justdb --nodeps dhcp-common-4.2.5-58.el7.centos.x86_64
    rpm -e --justdb --nodeps dhcp-libs-4.2.5-58.el7.centos.x86_64
    rpm -e --justdb --nodeps dmidecode-3.0-5.el7.x86_64
    rpm -e --justdb --nodeps dracut-033-502.el7.x86_64
    rpm -e --justdb --nodeps dracut-network-033-502.el7.x86_64
    rpm -e --justdb --nodeps e2fsprogs-1.42.9-10.el7.x86_64
    rpm -e --justdb --nodeps e2fsprogs-libs-1.42.9-10.el7.x86_64
    rpm -e --justdb --nodeps elfutils-libelf-0.168-8.el7.x86_64
    rpm -e --justdb --nodeps elfutils-libelf-devel-0.168-8.el7.x86_64
    rpm -e --justdb --nodeps elfutils-libs-0.168-8.el7.x86_64
    rpm -e --justdb --nodeps ethtool-4.8-1.el7.x86_64
    rpm -e --justdb --nodeps fipscheck-1.4.1-6.el7.x86_64
    rpm -e --justdb --nodeps fipscheck-lib-1.4.1-6.el7.x86_64
    rpm -e --justdb --nodeps fontconfig-2.10.95-11.el7.x86_64
    rpm -e --justdb --nodeps freetype-2.4.11-15.el7.x86_64
    rpm -e --justdb --nodeps freetype-devel-2.4.11-15.el7.x86_64
    rpm -e --justdb --nodeps gcc-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps gdk-pixbuf2-2.36.5-1.el7.x86_64
    rpm -e --justdb --nodeps gettext-0.19.8.1-2.el7.x86_64
    rpm -e --justdb --nodeps gettext-common-devel-0.19.8.1-2.el7.noarch
    rpm -e --justdb --nodeps gettext-libs-0.19.8.1-2.el7.x86_64
    rpm -e --justdb --nodeps ghostscript-9.07-28.el7_4.2.x86_64
    rpm -e --justdb --nodeps git-1.8.3.1-12.el7_4.x86_64
    rpm -e --justdb --nodeps glib2-2.50.3-3.el7.x86_64
    rpm -e --justdb --nodeps glibc-2.17-196.el7.x86_64
    rpm -e --justdb --nodeps glibc-common-2.17-196.el7.x86_64
    rpm -e --justdb --nodeps glibc-devel-2.17-196.el7.x86_64
    rpm -e --justdb --nodeps glibc-headers-2.17-196.el7.x86_64
    rpm -e --justdb --nodeps gmp-6.0.0-15.el7.x86_64
    rpm -e --justdb --nodeps gobject-introspection-1.50.0-1.el7.x86_64
    rpm -e --justdb --nodeps grep-2.20-3.el7.x86_64
    rpm -e --justdb --nodeps grubby-8.28-23.el7.x86_64
    rpm -e --justdb --nodeps gsettings-desktop-schemas-3.22.0-1.el7.x86_64
    rpm -e --justdb --nodeps gzip-1.5-9.el7.x86_64
    rpm -e --justdb --nodeps harfbuzz-1.3.2-1.el7.x86_64
    rpm -e --justdb --nodeps hwdata-0.252-8.6.el7.x86_64
    rpm -e --justdb --nodeps initscripts-9.49.39-1.el7.x86_64
    rpm -e --justdb --nodeps iproute-3.10.0-87.el7.x86_64
    rpm -e --justdb --nodeps ipset-libs-6.29-1.el7.x86_64
    rpm -e --justdb --nodeps iptables-1.4.21-18.0.1.el7.centos.x86_64
    rpm -e --justdb --nodeps iputils-20160308-10.el7.x86_64
    rpm -e --justdb --nodeps jansson-2.10-1.el7.x86_64
    rpm -e --justdb --nodeps jasper-libs-1.900.1-31.el7.x86_64
    rpm -e --justdb --nodeps kbd-legacy-1.15.5-13.el7.noarch
    rpm -e --justdb --nodeps kernel-headers-3.10.0-693.2.2.el7.x86_64
    rpm -e --justdb --nodeps kernel-tools-libs-3.10.0-693.2.2.el7.x86_64
    rpm -e --justdb --nodeps kmod-20-15.el7_4.2.x86_64
    rpm -e --justdb --nodeps kmod-libs-20-15.el7_4.2.x86_64
    rpm -e --justdb --nodeps kpartx-0.4.9-111.el7.x86_64
    rpm -e --justdb --nodeps krb5-devel-1.15.1-8.el7.x86_64
    rpm -e --justdb --nodeps krb5-libs-1.15.1-8.el7.x86_64
    rpm -e --justdb --nodeps libblkid-2.23.2-43.el7.x86_64
    rpm -e --justdb --nodeps libcap-2.22-9.el7.x86_64
    rpm -e --justdb --nodeps libcom_err-1.42.9-10.el7.x86_64
    rpm -e --justdb --nodeps libcom_err-devel-1.42.9-10.el7.x86_64
    rpm -e --justdb --nodeps libcroco-0.6.11-1.el7.x86_64
    rpm -e --justdb --nodeps libcurl-7.29.0-42.el7.x86_64
    rpm -e --justdb --nodeps libdb-5.3.21-20.el7.x86_64
    rpm -e --justdb --nodeps libdb-devel-5.3.21-20.el7.x86_64
    rpm -e --justdb --nodeps libdb-utils-5.3.21-20.el7.x86_64
    rpm -e --justdb --nodeps libdrm-2.4.74-1.el7.x86_64
    rpm -e --justdb --nodeps libdrm-devel-2.4.74-1.el7.x86_64
    rpm -e --justdb --nodeps libfontenc-1.1.3-3.el7.x86_64
    rpm -e --justdb --nodeps libgcc-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps libgcrypt-1.5.3-14.el7.x86_64
    rpm -e --justdb --nodeps libgnome-keyring-3.12.0-1.el7.x86_64
    rpm -e --justdb --nodeps libgomp-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps libibverbs-13-7.el7.x86_64
    rpm -e --justdb --nodeps libICE-1.0.9-9.el7.x86_64
    rpm -e --justdb --nodeps libICE-devel-1.0.9-9.el7.x86_64
    rpm -e --justdb --nodeps libkadm5-1.15.1-8.el7.x86_64
    rpm -e --justdb --nodeps libmount-2.23.2-43.el7.x86_64
    rpm -e --justdb --nodeps libnl3-3.2.28-4.el7.x86_64
    rpm -e --justdb --nodeps librados2-0.94.5-2.el7.x86_64
    rpm -e --justdb --nodeps libselinux-2.5-11.el7.x86_64
    rpm -e --justdb --nodeps libselinux-devel-2.5-11.el7.x86_64
    rpm -e --justdb --nodeps libselinux-utils-2.5-11.el7.x86_64
    rpm -e --justdb --nodeps libsemanage-2.5-8.el7.x86_64
    rpm -e --justdb --nodeps libss-1.42.9-10.el7.x86_64
    rpm -e --justdb --nodeps libstdc++-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps libstdc++-devel-4.8.5-16.el7.x86_64
    rpm -e --justdb --nodeps libtasn1-4.10-1.el7.x86_64
    rpm -e --justdb --nodeps libuuid-2.23.2-43.el7.x86_64
    rpm -e --justdb --nodeps libwebp-0.3.0-7.el7.x86_64
    rpm -e --justdb --nodeps libX11-1.6.5-1.el7.x86_64
    rpm -e --justdb --nodeps libX11-common-1.6.5-1.el7.noarch
    rpm -e --justdb --nodeps libX11-devel-1.6.5-1.el7.x86_64
    rpm -e --justdb --nodeps libxcb-1.12-1.el7.x86_64
    rpm -e --justdb --nodeps libxcb-devel-1.12-1.el7.x86_64
    rpm -e --justdb --nodeps libXcursor-1.1.14-8.el7.x86_64
    rpm -e --justdb --nodeps libXfixes-5.0.3-1.el7.x86_64
    rpm -e --justdb --nodeps libXfixes-devel-5.0.3-1.el7.x86_64
    rpm -e --justdb --nodeps libXi-1.7.9-1.el7.x86_64
    rpm -e --justdb --nodeps libXpm-3.5.12-1.el7.x86_64
    rpm -e --justdb --nodeps libXrandr-1.5.1-2.el7.x86_64
    rpm -e --justdb --nodeps libXrender-0.9.10-1.el7.x86_64
    rpm -e --justdb --nodeps libXt-1.1.5-3.el7.x86_64
    rpm -e --justdb --nodeps libXxf86vm-1.1.4-1.el7.x86_64
    rpm -e --justdb --nodeps libXxf86vm-devel-1.1.4-1.el7.x86_64
    rpm -e --justdb --nodeps linux-firmware-20170606-56.gitc990aae.el7.noarch
    rpm -e --justdb --nodeps logrotate-3.8.6-14.el7.x86_64
    rpm -e --justdb --nodeps lsscsi-0.27-6.el7.x86_64
    rpm -e --justdb --nodeps mesa-libEGL-17.0.1-6.20170307.el7.x86_64
    rpm -e --justdb --nodeps mesa-libgbm-17.0.1-6.20170307.el7.x86_64
    rpm -e --justdb --nodeps mesa-libGL-17.0.1-6.20170307.el7.x86_64
    rpm -e --justdb --nodeps mesa-libglapi-17.0.1-6.20170307.el7.x86_64
    rpm -e --justdb --nodeps ncurses-base-5.9-14.20130511.el7_4.noarch
    rpm -e --justdb --nodeps ncurses-devel-5.9-14.20130511.el7_4.x86_64
    rpm -e --justdb --nodeps ncurses-libs-5.9-14.20130511.el7_4.x86_64
    rpm -e --justdb --nodeps net-snmp-agent-libs-5.7.2-28.el7.x86_64
    rpm -e --justdb --nodeps net-snmp-libs-5.7.2-28.el7.x86_64
    rpm -e --justdb --nodeps NetworkManager-1.8.0-9.el7.x86_64
    rpm -e --justdb --nodeps NetworkManager-libnm-1.8.0-9.el7.x86_64
    rpm -e --justdb --nodeps nss-softokn-3.28.3-8.el7_4.x86_64
    rpm -e --justdb --nodeps nss-softokn-freebl-3.28.3-8.el7_4.x86_64
    rpm -e --justdb --nodeps nss-util-3.28.4-3.el7.x86_64
    rpm -e --justdb --nodeps openldap-2.4.44-5.el7.x86_64
    rpm -e --justdb --nodeps openssh-7.4p1-12.el7_4.x86_64
    rpm -e --justdb --nodeps openssh-clients-7.4p1-12.el7_4.x86_64
    rpm -e --justdb --nodeps openssl-1.0.2k-8.el7.x86_64
    rpm -e --justdb --nodeps openssl-devel-1.0.2k-8.el7.x86_64
    rpm -e --justdb --nodeps openssl-libs-1.0.2k-8.el7.x86_64
    rpm -e --justdb --nodeps p11-kit-0.23.5-3.el7.x86_64
    rpm -e --justdb --nodeps p11-kit-trust-0.23.5-3.el7.x86_64
    rpm -e --justdb --nodeps pango-1.40.4-1.el7.x86_64
    rpm -e --justdb --nodeps pciutils-3.5.1-2.el7.x86_64
    rpm -e --justdb --nodeps pciutils-libs-3.5.1-2.el7.x86_64
    rpm -e --justdb --nodeps pcre-8.32-17.el7.x86_64
    rpm -e --justdb --nodeps pcre-devel-8.32-17.el7.x86_64
    rpm -e --justdb --nodeps perl-5.16.3-292.el7.x86_64
    rpm -e --justdb --nodeps perl-devel-5.16.3-292.el7.x86_64
    rpm -e --justdb --nodeps perl-ExtUtils-Install-1.58-292.el7.noarch
    rpm -e --justdb --nodeps perl-ExtUtils-ParseXS-3.18-3.el7.noarch
    rpm -e --justdb --nodeps perl-Git-1.8.3.1-12.el7_4.noarch
    rpm -e --justdb --nodeps perl-libs-5.16.3-292.el7.x86_64
    rpm -e --justdb --nodeps perl-macros-5.16.3-292.el7.x86_64
    rpm -e --justdb --nodeps perl-Net-SSLeay-1.55-6.el7.x86_64
    rpm -e --justdb --nodeps policycoreutils-2.5-17.1.el7.x86_64
    rpm -e --justdb --nodeps procps-ng-3.3.10-16.el7.x86_64
    rpm -e --justdb --nodeps python-2.7.5-58.el7.x86_64
    rpm -e --justdb --nodeps python-libs-2.7.5-58.el7.x86_64
    rpm -e --justdb --nodeps python-perf-3.10.0-693.2.2.el7.x86_64
    rpm -e --justdb --nodeps readline-6.2-10.el7.x86_64
    rpm -e --justdb --nodeps rpm-4.11.3-25.el7.x86_64
    rpm -e --justdb --nodeps rpm-build-libs-4.11.3-25.el7.x86_64
    rpm -e --justdb --nodeps rpm-devel-4.11.3-25.el7.x86_64
    rpm -e --justdb --nodeps rpm-libs-4.11.3-25.el7.x86_64
    rpm -e --justdb --nodeps rpm-python-4.11.3-25.el7.x86_64
    rpm -e --justdb --nodeps rsync-3.0.9-18.el7.x86_64
    rpm -e --justdb --nodeps shared-mime-info-1.8-3.el7.x86_64
    rpm -e --justdb --nodeps subversion-libs-1.7.14-11.el7_4.x86_64
    rpm -e --justdb --nodeps systemd-219-42.el7_4.1.x86_64
    rpm -e --justdb --nodeps systemd-libs-219-42.el7_4.1.x86_64
    rpm -e --justdb --nodeps systemd-sysv-219-42.el7_4.1.x86_64
    rpm -e --justdb --nodeps systemtap-sdt-devel-3.1-3.el7.x86_64
    rpm -e --justdb --nodeps tar-1.26-32.el7.x86_64
    rpm -e --justdb --nodeps util-linux-2.23.2-43.el7.x86_64
    rpm -e --justdb --nodeps vim-minimal-7.4.160-2.el7.x86_64
    rpm -e --justdb --nodeps virt-what-1.13-10.el7.x86_64
    rpm -e --justdb --nodeps wpa_supplicant-2.6-5.el7.x86_64
    rpm -e --justdb --nodeps xorg-x11-proto-devel-7.7-20.el7.noarch
    rpm -e --justdb --nodeps yum-3.4.3-154.el7.centos.noarch
    rpm -e --justdb --nodeps yum-plugin-fastestmirror-1.1.31-42.el7.noarch
    

    try yum update
    Code (Text):
    yum -y update
    
     
  13. hitman

    hitman Member

    117
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    Jul 18, 2014
    Ratings:
    +14
    Local Time:
    8:13 AM
  14. eva2000

    eva2000 Administrator Staff Member

    30,579
    6,854
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    May 24, 2014
    Brisbane, Australia
    Ratings:
    +10,275
    Local Time:
    4:13 PM
    Nginx 1.13.x
    MariaDB 5.5
    so you did run each of the outputted commands ? i.e.
    Code (Text):
    rpm -e --justdb --nodeps atk-2.22.0-3.el7.x86_64
    


    who's the web host with ? if it's a cloud based vps provider, are you able to backup data and migrate to another vps with the provider ?

    probably be easier to backup data and reinstall unless you have the time to troubleshoot this to resolution
     
  15. hitman

    hitman Member

    117
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    Jul 18, 2014
    Ratings:
    +14
    Local Time:
    8:13 AM
    webhost is hostus
    yeap i will probably reinstall

    thank you for all your help, once again you prove to be amazing
     
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