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CentOS 7.x Fix for Error: Package: uw-imap-devel-2007f-4.el7.1.x86_64 (@epel)

Discussion in 'CentOS, Redhat & Oracle Linux News' started by eva2000, Jul 29, 2017.

  1. eva2000

    eva2000 Administrator Staff Member

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    Just came across a new CentOS 7 only error during yum updates with EPEL yum repository and update to libc-client yum package located in EPEL yum repo. What is happening below is that 'Error: Package: uw-imap-devel-2007f-4.el7.1.x86_64 (@epel)' is complaining that it requires a specific version of libc-client = libc-client-2007f-4.el7.1.x86_64 (@epel) but yum update is trying to update libc-client to a newer version libc-client-2007f-14.el7.x86_64 (epel).

    Update August 3, 2017: newer issue is 2007f-16 version of libc-client and uw-imap-devel were released by EPEL which is proper way to release these with matching 2007f-16 versions for dependencies. So Centmin Mod 123.08stable and 123.09beta01 have been updated to versionlock and update to 2007f-16 versions of these 2 packages.

    Update 2: July 30th, 2017 - workaround fix applied to latest Centmin Mod 123.09beta01 branch using centminmod.com mirrored copy of missing uw-imap-devel and libc-client 2007f-4 version of RPM packages for CentOS 7 only issue Beta Branch - CentOS 7 workaround fix for EPEL uw-imap-devel & libc-client issues

    Update: July 30th, 2017 - for now I have updated Centmin Mod 123.08stable and 123.09beta01 with new PHPIMAP variable set to PHPIMAP='n' by default (Beta Branch - add PHPIMAP option to disable or enable PHP Imap extension), so when PHP compiles/installs are done IMAP php extension is disable temporarily until I can figure this out

    Code (Text):
    yum -y update --disableplugin=priorities                                                                                                                                                                       
    Loaded plugins: fastestmirror
    Loading mirror speeds from cached hostfile
     * base: mirror.gpmidi.net
     * elrepo: muug.ca
     * epel: fedora-epel.mirrors.tds.net
     * extras: centos.mirror.ca.planethoster.net
     * rpmforge: repoforge.mirror.constant.com
     * updates: centos.bhs.mirrors.ovh.net
    Resolving Dependencies
    --> Running transaction check
    ---> Package libc-client.x86_64 0:2007f-4.el7.1 will be updated
    --> Processing Dependency: libc-client(x86-64) = 2007f-4.el7.1 for package: uw-imap-devel-2007f-4.el7.1.x86_64
    ---> Package libc-client.x86_64 0:2007f-14.el7 will be an update
    --> Finished Dependency Resolution
    Error: Package: uw-imap-devel-2007f-4.el7.1.x86_64 (@epel)
               Requires: libc-client(x86-64) = 2007f-4.el7.1
               Removing: libc-client-2007f-4.el7.1.x86_64 (@epel)
                   libc-client(x86-64) = 2007f-4.el7.1
               Updated By: libc-client-2007f-14.el7.x86_64 (epel)
                   libc-client(x86-64) = 2007f-14.el7
     You could try using --skip-broken to work around the problem
     You could try running: rpm -Va --nofiles --nodigest


    Normally, there should be an accompanying updated uw-imap-devel version i.e. uw-imap-devel-2007f-14.el7.1.x86_64 to match libc-client-2007f-14.el7.x86_64 (epel). But EPEL yum repo doesn't have it. I see Fedora Rawhide does uw-imap-devel-2007f-14.fc27.x86_64.rpm Fedora Rawhide Download. So technically, if you want you can grab the Fedora Rawhide SRC RPM and rebuild a custom RPM for CentOS 7 but then you'd be responsible for updates to uw-imap-devel, libc-client RPMs everytime.

    Fixing Issue



    There are many ways to fix this, but easiest for now is to lock libc-client updates to the one uw-imap-devel wants to use, libc-client = libc-client-2007f-4.el7.1.x86_64 (@epel).

    You can use yum versionlock plugin to lock a yum package to a specific version so yum updates won't update it and ignore newer versions of the package - libc-client in this case.

    SSH commands are as follows
    Code (Text):
    yum -y install yum-plugin-versionlock
    yum versionlock libc-client
    

    listing versionlocked packages using command
    Code (Text):
    yum versionlock list
    

    will give
    Code (Text):
    yum versionlock list
    Loaded plugins: fastestmirror, priorities, versionlock
    0:libc-client-2007f-4.el7.1.*
    versionlock list done
    

    Now yum updates will skip over libc-client even if there are updates.
     
    Last edited: Aug 3, 2017
    • Informative Informative x 1
  2. eva2000

    eva2000 Administrator Staff Member

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    I will add this to 123.09beta01 too for automatic detection soon, but for now you can manually do it.

    edit: 123.09beta01 has been updated so centmin.sh menu option 23 submenu option 2 to update /usr/local/src/centminmod code. Then exit centmin.sh and re-enter /usr/local/src/centminmod directory and run centmin.sh and exit again via centmin.sh menu option 24. This process will trigger auto fixing and auto run of above manual steps if yum-plugin-versionlock doesn't exist.
     
    Last edited: Jul 29, 2017
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  3. Jon Snow

    Jon Snow Active Member

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    I ran the command to update last night and no errors on my side.
     
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  4. dooma

    dooma Member

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    I faced this issue yesterday and I ran the auto fixing.
     
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  5. eva2000

    eva2000 Administrator Staff Member

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  6. eva2000

    eva2000 Administrator Staff Member

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    hmm seems this bug still breaks fresh 123.09beta01 install's initial PHP install - working on the solution now :)

    looks like on fresh initial installs, libc-client that gets installs is the newer incompatible one
    Code (Text):
    ---> Package libc-client.x86_64 0:2007f-14.el7 will be installed
    


    hmm making it trickier is it seems EPEL repo removed older working libc-client 2007f-4.el7 from availability on fresh installs now so can't downgrade to it from 2007-f14.el7 !
    Code (Text):
    yum list libc-client --showduplicates | tr -s ' '
    Loaded plugins: fastestmirror, priorities
    Loading mirror speeds from cached hostfile
     * base: centos.mirror.digitalpacific.com.au
     * epel: epel.mirror.digitalpacific.com.au
     * extras: mirror.optus.net
     * rpmforge: mirror.ventraip.net.au
     * updates: centos.mirror.digitalpacific.com.au
    354 packages excluded due to repository priority protections
    Installed Packages
    libc-client.x86_64 2007f-14.el7 @epel
    Available Packages
    libc-client.x86_64 2007f-14.el7 epel
    


    edit: looks like EPEL is now starting to show for non-devel uw-imap newer 2007f-14 version uw-imap-2007f-14.el7.x86_64.rpm CentOS 7 Download so could be temporary issue in delays for populating EPEL yum mirrors with the devel version of uw-imap-devel-2007f-14.el7.
    Code (Text):
    yum list uw-imap uw-imap-devel libc-client --showduplicates | tr -s ' '
    Loaded plugins: fastestmirror, priorities
    Loading mirror speeds from cached hostfile
     * base: centos.mirror.serversaustralia.com.au
     * epel: epel.mirror.digitalpacific.com.au
     * extras: mirror.aarnet.edu.au
     * rpmforge: mirror.ventraip.net.au
     * updates: mirror.aarnet.edu.au
    354 packages excluded due to repository priority protections
    Installed Packages
    libc-client.x86_64 2007f-14.el7 @epel
    Available Packages
    libc-client.x86_64 2007f-14.el7 epel
    uw-imap.x86_64 2007f-14.el7 epel 


    edit: even more messed up is my local virtualbox test server's EPEL repo is reporting uw-imap-devel as not available at all on fresh centmin mod 123.09beta01 installs rather than older 2007f-4 version.

    even trying all repos, don't show uw-imap-devel 2007f-4 or any version as available
    Code (Text):
    yum provides /usr/lib64/libc-client.so --enablerepo=remi,epel,epel-testing,remi-test,fasttrack --disableplugin=priorities
    Loaded plugins: fastestmirror
    Loading mirror speeds from cached hostfile
     * base: centos.mirror.serversaustralia.com.au
     * epel: epel.mirror.digitalpacific.com.au
     * epel-testing: epel.mirror.digitalpacific.com.au
     * extras: mirror.aarnet.edu.au
     * fasttrack: centos.mirror.serversaustralia.com.au
     * remi: mirror.bebout.net
     * remi-test: mirror.bebout.net
     * rpmforge: mirror.ventraip.net.au
     * updates: mirror.aarnet.edu.au
    No matches found
    

    yup uw-imap-devel has gone missing completely from EPEL yum repo
    Code (Text):
    yum list uw-imap uw-imap-devel libc-client --enablerepo=remi,epel,epel-testing,remi-test,fasttrack --disableplugin=priorities -q | tr -s ' '
    Installed Packages
    libc-client.x86_64 2007f-14.el7 @epel
    Available Packages
    uw-imap.x86_64 2007f-14.el7 epel
    

    on working CentOS 7 uw-imap-devel 2007f-4 version is reported as installed
    Code (Text):
    yum provides /usr/lib64/libc-client.so
    Loaded plugins: fastestmirror, priorities, versionlock
    Loading mirror speeds from cached hostfile
     * base: mirror.gpmidi.net
     * elrepo: muug.ca
     * epel: fedora-epel.mirrors.tds.net
     * extras: centos.mirror.ca.planethoster.net
     * rpmforge: repoforge.mirror.constant.com
     * updates: centos.bhs.mirrors.ovh.net
    457 packages excluded due to repository priority protections
    centos-sclo-rh/x86_64/filelists_db                                                                                                                                                                                                 | 7.7 MB  00:00:04
    centos-sclo-sclo/x86_64/filelists_db                                                                                                                                                                                               | 624 kB  00:00:00
    elrepo/filelists_db                                                                                                                                                                                                                |  55 kB  00:00:00
    epel/x86_64/filelists_db                                                                                                                                                                                                           | 8.1 MB  00:00:00
    extras/7/x86_64/filelists_db                                                                                                                                                                                                       | 1.1 MB  00:00:00
    nodesource/x86_64/filelists_db                                                                                                                                                                                                     | 513 kB  00:00:00
    updates/7/x86_64/filelists_db                                                                                                                                                                                                      | 4.4 MB  00:00:00
    uw-imap-devel-2007f-4.el7.1.x86_64 : Development tools for programs which will use the UW IMAP library
    Repo        : @epel
    Matched from:
    Filename    : /usr/lib64/libc-client.so
    

    So looks like I need to create a mirror for uw-imap-devel-2007-f-4 RPM for CentOS 7 and libc-client-2007f-4 RM for CentOS 7 as EPEL yum mirror doesn't problem them now! Could be problem with EPEL yum mirrors themselves or a change on developer end as to what is built ? I've made local mirror for these RPMs on official centminmod.com site at https://centminmod.com/centminmodparts/uw-imap/ so will see about working that into Centmin Mod 123.09beta01 branch.

    So manual fix would be like but will also version lock uw-imap-devel + libc-client
    Code (Text):
    cd /svr-setup
    wget https://centminmod.com/centminmodparts/uw-imap/libc-client-2007f-4.el7.1.x86_64.rpm
    wget https://centminmod.com/centminmodparts/uw-imap/uw-imap-devel-2007f-4.el7.1.x86_64.rpm
    yum -y remove libc-client-2007f-14.el7.x86_64
    yum -y localinstall libc-client-2007f-4.el7.1.x86_64.rpm uw-imap-devel-2007f-4.el7.1.x86_64.rpm
    yum -y install yum-plugin-versionlock
    yum versionlock libc-client uw-imap-devel
    yum list uw-imap-devel libc-client
    yum history info uw-imap-devel libc-client 2>&1 | head -n17
    

    confirm with yum history info check
    Code (Text):
    yum history info uw-imap-devel libc-client 2>&1 | head -n17
    Loaded plugins: fastestmirror, priorities, versionlock
    Transaction ID : 31
    Begin time     : Sun Jul 30 01:34:19 2017
    Begin rpmdb    : 737:bc8ae68825962a2ae1bece41708dee5302944027
    End time       :            01:34:20 2017 (1 seconds)
    End rpmdb      : 739:4243a943b7970065b6ef7c8c3bad0d3f6e9a54e1
    User           : root <root>
    Return-Code    : Success
    Command Line   : localinstall libc-client-2007f-4.el7.1.x86_64.rpm uw-imap-devel-2007f-4.el7.1.x86_64.rpm
    Transaction performed with:
        Installed     rpm-4.11.3-21.el7.x86_64                      @base
        Installed     yum-3.4.3-150.el7.centos.noarch               @base
        Installed     yum-plugin-fastestmirror-1.1.31-40.el7.noarch @base
    Packages Altered:
        Install libc-client-2007f-4.el7.1.x86_64   @/libc-client-2007f-4.el7.1.x86_64
        Install uw-imap-devel-2007f-4.el7.1.x86_64 @/uw-imap-devel-2007f-4.el7.1.x86_64
    -------------------------------------------------------------------------------
    


    For now I have updated Centmin Mod 123.08stable and 123.09beta01 with new PHPIMAP variable set to PHPIMAP='n' by default (Beta Branch - add PHPIMAP option to disable or enable PHP Imap extension), so when PHP compiles/installs are done IMAP php extension is disable temporarily until I can figure this out :)

    Update: workaround fix applied to latest Centmin Mod 123.09beta01 branch using centminmod.com mirrored copy of missing uw-imap-devel and libc-client 2007f-4 version of RPM packages for CentOS 7 only issue Beta Branch - CentOS 7 workaround fix for EPEL uw-imap-devel & libc-client issues
     
    Last edited: Jul 30, 2017
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  7. eva2000

    eva2000 Administrator Staff Member

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    Summary



    Issue only relates to CentOS 7 systems and EPEL yum repo usage
    1. For existing Centmin Mod installs with CentOS 7, EPEL yum repo just released a new libc-client-2007f-14 rpm package to update libc-client-2007f-4 version. But uw-imap-devel 2007f-4 package which is required for PHP-FPM imap php extension depends on libc-client-2007f-4 older version. Usually, if libc-client-2007f-14 was released, an accompanying uw-imap-devel 2007f-14 version would be updated too. But CentOS 7, EPEL 7 yum repo does not have a uw-imap-devel 2007f-14 update. So yum updates report a conflict as yum update wants to update libc-client-2007f-4 to libc-client-2007f-14 but uw-imap-devel 2007f-4 complains as it depends on older version.
    2. For fresh Centmin Mod installs with CentOS 7, initial installation will install libc-client from EPEL which is is the newer conflicting version = libc-client-2007f-14. But EPEL yum repo also removed libc-client-2007f-4 older version so you can't downgrade from libc-client-2007f-14 to libc-client-2007f-4 as libc-client-2007f-4 doesn't exist anymore. To add to the issues, EPEL yum repo for CentOS 7 is now missing the uw-imap-devel package altogether so 2007f-4 or 2007f-14 versions of the package are not available via EPEL yum repo !
    3. Update August 3, 2017: newer issue is 2007f-16 version of libc-client and uw-imap-devel were released by EPEL which is proper way to release these with matching 2007f-16 versions for dependencies. So Centmin Mod 123.08stable and 123.09beta01 have been updated to versionlock and update to 2007f-16 versions of these 2 packages.
    So this 123.09beta01 update, fixes these 2 issues by making 2007f-4 version of uw-imap-devel and libc-client EPEL 7 RPM packages available via a centminmod.com local hosted mirror which is now installed on fresh 123.09beta01 installs and using yum versionlock plugin are locked to 2007f-4 versions until we can dig deeper into sorting out EPEL 7 mess. For existing 123.09beta01 installs, if you update via centmin.sh menu option 23 submenu option 2 and exit centmin.sh and re-run centmin.sh then the same workaround fix will automatically be done in background for your system.

    Confirmed working for fresh 123.09beta01 installs checking post install check list to see if PHP-FPM was installed
    Code (Text):
    *************************************************
    * Post-Install Check List....
    *************************************************
    
    --------------------------------------------------------
    Check ccache Version:
    --------------------------------------------------------
    ccache version 3.3.4
    
    Copyright (C) 2002-2007 Andrew Tridgell
    Copyright (C) 2009-2017 Joel Rosdahl
    
    This program is free software; you can redistribute it and/or modify it under
    the terms of the GNU General Public License as published by the Free Software
    Foundation; either version 3 of the License, or (at your option) any later
    version.
    
    --------------------------------------------------------
    Check Nginx Version:
    --------------------------------------------------------
    nginx version: nginx/1.13.3
    built by clang 3.4.2 (tags/RELEASE_34/dot2-final)
    built with LibreSSL 2.5.5
    TLS SNI support enabled
    configure arguments: --with-ld-opt='-lrt -ljemalloc -Wl,-z,relro -Wl,-rpath,/usr/local/lib' --with-cc-opt='-m64 -mtune=native -DTCP_FASTOPEN=23 -g -O3 -fstack-protector -fuse-ld=gold --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wno-sign-compare -Wno-string-plus-int -Wno-deprecated-declarations -Wno-unused-parameter -Wno-unused-const-variable -Wno-conditional-uninitialized -Wno-mismatched-tags -Wno-sometimes-uninitialized -Wno-parentheses-equality -Wno-tautological-compare -Wno-self-assign -Wno-deprecated-register -Wno-deprecated -Wno-invalid-source-encoding -Wno-pointer-sign -Wno-parentheses -Wno-enum-conversion -Wno-c++11-compat-deprecated-writable-strings -Wno-write-strings -gsplit-dwarf' --sbin-path=/usr/local/sbin/nginx --conf-path=/usr/local/nginx/conf/nginx.conf --with-compat --with-http_stub_status_module --with-http_secure_link_module --with-libatomic --with-http_gzip_static_module --with-http_sub_module --with-http_addition_module --with-http_image_filter_module=dynamic --with-http_geoip_module --with-stream_geoip_module --with-stream_realip_module --with-stream_ssl_preread_module --with-threads --with-stream=dynamic --with-stream_ssl_module --with-http_realip_module --add-dynamic-module=../ngx-fancyindex-0.4.0 --add-module=../ngx_cache_purge-2.3 --add-module=../ngx_devel_kit-0.3.0 --add-module=../set-misc-nginx-module-0.31 --add-module=../echo-nginx-module-0.60 --add-module=../redis2-nginx-module-0.14 --add-module=../ngx_http_redis-0.3.7 --add-module=../memc-nginx-module-0.18 --add-module=../srcache-nginx-module-0.31 --add-module=../headers-more-nginx-module-0.32 --with-pcre=../pcre-8.41 --with-pcre-jit --with-zlib=../zlib-1.2.11 --with-http_ssl_module --with-http_v2_module --with-openssl=../libressl-2.5.5
    
    --------------------------------------------------------
    Check PHP-FPM Version:
    --------------------------------------------------------
    PHP 5.6.31 (cli) (built: Jul 30 2017 02:50:42)
    Copyright (c) 1997-2016 The PHP Group
    Zend Engine v2.6.0, Copyright (c) 1998-2016 Zend Technologies
        with Zend OPcache v7.0.6-dev, Copyright (c) 1999-2016, by Zend Technologies
    
    --------------------------------------------------------
    Check MariaDB installed RPM Versions:
    --------------------------------------------------------
    MariaDB-common-10.1.25-1.el7.centos.x86_64
    MariaDB-compat-10.1.25-1.el7.centos.x86_64
    MariaDB-server-10.1.25-1.el7.centos.x86_64
    MariaDB-devel-10.1.25-1.el7.centos.x86_64
    MariaDB-client-10.1.25-1.el7.centos.x86_64
    MariaDB-shared-10.1.25-1.el7.centos.x86_64
    
    --------------------------------------------------------
    Check Memcached Server Version:
    --------------------------------------------------------
    memcached 1.5.0
    
    --------------------------------------------------------
    Check CSF Firewall Version:
    --------------------------------------------------------
    csf: v10.17 (generic)
    
    --------------------------------------------------------
    Check Siege Benchmark Version:
    --------------------------------------------------------
    SIEGE 4.0.2
    
    Copyright (C) 2016 by Jeffrey Fulmer, et al.
    This is free software; see the source for copying conditions.
    There is NO warranty; not even for MERCHANTABILITY or FITNESS
    FOR A PARTICULAR PURPOSE.
    
    
    --------------------------------------------------------
    Check mysqlreport version:
    --------------------------------------------------------
    mysqlreport v3.5-maria11 Jul 4 2013
    
    --------------------------------------------------------
    Check pure-ftpd Version:
    --------------------------------------------------------
    pure-ftpd v1.0.42
    
    --------------------------------------------------------
    Check YUM Repo List
    --------------------------------------------------------
    Loaded plugins: fastestmirror, priorities, versionlock
    Loading mirror speeds from cached hostfile
     * base: mirror.nsw.coloau.com.au
     * epel: mirror.nsw.coloau.com.au
     * extras: mirror.nsw.coloau.com.au
     * rpmforge: mirror.ventraip.net.au
     * updates: mirror.nsw.coloau.com.au
    354 packages excluded due to repository priority protections
    repo id             repo name                                       status
    base/7/x86_64       CentOS-7 - Base                                  7,261+2,102
    epel/x86_64         Extra Packages for Enterprise Linux 7 - x86_64  10,884+1,048
    extras/7/x86_64     CentOS-7 - Extras                                      447+2
    mariadb             MariaDB                                                 14+2
    rpmforge            RHEL 7 - RPMforge.net - dag                          142+103
    updates/7/x86_64    CentOS-7 - Updates                                 1,769+377
    varnish-4.1/x86_64  Varnish Cache 4.1 for Enterprise Linux                    37
    repolist: 20,554
    
    --------------------------------------------------------
    mytimes check:
    /usr/bin/mytimes
    --------------------------------------------------------
    Sun Jul 30 02:56:08 UTC 2017    [UTC]
    Sun Jul 30 12:56:08 AEST 2017   [Australia/Brisbane]
    Sat Jul 29 19:56:08 PDT 2017    [America/Los_Angeles]
    Sat Jul 29 21:56:08 CDT 2017    [America/Chicago]
    Sat Jul 29 22:56:08 EDT 2017    [America/New_York]
    Sat Jul 29 22:56:08 EDT 2017    [America/Montreal]
    Sun Jul 30 03:56:08 BST 2017    [Europe/London]
    Sun Jul 30 04:56:08 CEST 2017   [Europe/Berlin]
    Sun Jul 30 09:56:08 +07 2017    [Asia/Bangkok]
    Sun Jul 30 09:56:08 +07 2017    [Asia/Ho_Chi_Minh]
    Sun Jul 30 09:56:08 WIB 2017    [Asia/Jakarta]
    Sun Jul 30 10:56:08 +08 2017    [Asia/Kuala_Lumpur]
    Sun Jul 30 10:56:08 +08 2017    [Asia/Singapore]
    --------------------------------------------------------
    


    confirm that PHP was compiled with IMAP php extension support
    Code (Text):
    php --ri imap
    
    imap
    
    IMAP c-Client Version => 2007f
    SSL Support => enabled
    Kerberos Support => enabled
    

    Code (Text):
    php -m
    [PHP Modules]
    bcmath
    bz2
    calendar
    Core
    ctype
    curl
    date
    dom
    enchant
    ereg
    exif
    filter
    ftp
    gd
    geoip
    gettext
    gmp
    hash
    iconv
    igbinary
    imagick
    imap
    intl
    json
    ldap
    libxml
    mailparse
    mbstring
    mcrypt
    memcache
    memcached
    mhash
    mysql
    mysqli
    mysqlnd
    openssl
    pcntl
    pcre
    PDO
    pdo_mysql
    pdo_sqlite
    Phar
    posix
    pspell
    readline
    redis
    Reflection
    session
    shmop
    SimpleXML
    snmp
    soap
    sockets
    SPL
    sqlite3
    standard
    sysvmsg
    sysvsem
    sysvshm
    tidy
    tokenizer
    xml
    xmlreader
    xmlrpc
    xmlwriter
    xsl
    Zend OPcache
    zip
    zlib
    
    [Zend Modules]
    Zend OPcache
    
    
     
    Last edited: Aug 3, 2017
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